GgaEX0026626 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr3:107371392-107373930:+
Coord C1 exon
chr3:107371392-107371478
Coord A exon
chr3:107371563-107371664
Coord C2 exon
chr3:107373751-107373930
Length
102 bp
Sequences
Splice sites
3' ss Seq
CGGCGCTCGGTGTGTTGCAGCGG
3' ss Score
6.82
5' ss Seq
TAGGGTGCG
5' ss Score
-15.04
Exon sequences
Seq C1 exon
GCGGGCCGCGGGCGGGACGGAGGGCGGCGGAGCCGGGACCGACCACGATGCCCCGGCGGAAGCAGAGCCACCCGCAGCCGGTGAAGG
Seq A exon
CGGATGCGGAGGACGGCCCCGATGAGACGGCGGGAGCGGCGCTGGTGCTGCCCGACGACCTGCTGCTGGGCCGCGGCCTGGCCTGCGAGAAGGGACCGCTAG
Seq C2 exon
CAGAGGCACTGGTGGGGAAGATCGCCATCCCAGCGTACGCGCTGAGCGACGACGACTGCTCCTCCGGGTACCAGCAGCTGAGCGTGGACAGCGACCCCGAGGAGGGCGGCGAGCCCGGCCCCGCAGCGCTGCCCTGCCGCCAGTGTGGGCTGCAGCTGGCTGCCAGCCTGGGCCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022855-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.457 C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGACCGACCACGATG
R:
CAGCTGCAGCCCACACTG
Band lengths:
213-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]