GgaALTA0009099-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr4:34403174-34404401:-
Coord C1 exon
chr4:34404200-34404401
Coord A exon
chr4:34403275-34403277
Coord C2 exon
chr4:34403174-34403274
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AACCTTTAATTTTCTGTTAGCAG
3' ss Score
2.24
Exon sequences
Seq C1 exon
CTTCCTCCGTCTTATGAGCAGGTGATAAAGGAAATAAATCAAGTGCAAGTGAATACAACAAATAACAATAATGCTGCTGCTCCTAGACATACCACTACTTCTGCAACACAAACTGACTTTCCAGAGGAATTAATCAGCCATTTGCCAGAAAGTAATGTAAAAAGTGGTGTGCCTACACACTGGGAATCTACAAACTATCCAG
Seq A exon
CAG
Seq C2 exon
GACCGAGTCCCCTGAAACCTCCTAGGCCTTCTGCATCTCTCTTGAACAGATCTTCTTCAGAAAATGAGACTTTCTTAATAGTTCGTGAAAATTCTGAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023360-14-12,14-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCATTTGCCAGAAAGT
R:
AGATGCAGAAGGCCTAGGAGG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]