RnoALTA0036153-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185392280-185394131:+
Coord C1 exon
chr2:185392280-185392433
Coord A exon
chr2:185393142-185393149
Coord C2 exon
chr2:185393150-185394131
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAAGTAATA
5' ss Score
1.48
3' ss Seq
TCTTCCTTGGCTGCCCTCAGCAC
3' ss Score
6.4
Exon sequences
Seq C1 exon
CTCCCACCCTCCTACGAACAAGTGATAAAAGAAATCAACCAAGTCCAGGTGAACTCCACAAATAACAATAATGCTGCCGCCACTCCAAGGAGCACTATTACTTCTGCAACCCAGACCGACTTCCCAGAAGAAATAGACGGCGATCCACCTCCAA
Seq A exon
CACTACAG
Seq C2 exon
GCGCCTCTCAAGCCTCTCCAGTCTTCACCAGCAGCCTCCGCTGGCAATCTCCCCCCAGGGGTGGCACCTTTAATAGTCTTTGATATTTGTGAAGAGCAGAATTGTCCTGAAAAACCCAGTGCTACAAGATGTCCAGTGCCAAGACCAAGATCAAAAACCAACCTCAGACCAGTAGCTAGGGACGCTCACAGCAAAGAGAAAAACGTCCCGAAAAGTCCAGTGACTCCCAGAGAAGACTGGCCGCCCCAGTGTCTGCTGGACAGCACCTGCAATTTAGATAGTCAGTCAGTGATGAACATTATGAACACAGAACAAAGCCAAAACACTATTATTTCCAGGATCAAAGCATTTGAGGGTCAGACAAGCACAGAAATCCCGGGACCGCCCAAGAAACCTGAGATTATTCCCCGCACTGTTCCCCCGAAGCCTGCTGTTTCCTCAGGGAAACCCTTGGTGGCACCCAAGCCAGCTGCTAACAGAGCTTCTGGAGAATGGGACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752-17-19,17-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCCAAGGAGCACTATT
R:
CTGGTGAAGACTGGAGAGGCT
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]