GgaALTA0009099-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32715713-32717733:-
Coord C1 exon
chr4:32717532-32717733
Coord A exon
chr4:32716558-32716609
Coord C2 exon
chr4:32715713-32716557
Length
52 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AACCTTTAATTTTCTGTTAGCAG
3' ss Score
2.24
Exon sequences
Seq C1 exon
CTTCCTCCGTCTTATGAGCAGGTGATAAAGGAAATAAATCAAGTGCAAGTGAATACAACAAATAACAATAATGCTGCTGCTCCTAGACATACCACTACTTCTGCAACACAAACTGACTTTCCAGAGGAATTAATCAGCCATTTGCCAGAAAGTAATGTAAAAAGTGGTGTGCCTACACACTGGGAATCTACAAACTATCCAG
Seq A exon
CAGGACCGAGTCCCCTGAAACCTCCTAGGCCTTCTGCATCTCTCTTGAACAG
Seq C2 exon
ATCTTCTTCAGAAAATGAGACTTTCTTAATAGTTCGTGAAAATTCTGAAGGTCAAAGGCGCCAAGAAAATCCCAATGCTGTGATATGTCCTGTACCAAAGCCAAGATCAAGAAGCAATCTCAGACCTTTGGTCAAAAATACTGGAAGTCAGATAAGAGAGAATGGGGAAGAAGTGAACCAGTCTGACACGAAGAGGCAGCAACTTCCAGTTCAGCAGTCATCTGTCTTAGATGATAGCTTACTAGACAATCACGTGACAGTGGACAGCATGAGTACAGGCAAGAGCCAAAGTAGTATTGTTTCAAGAATCAAAGTTTTTGAAACCCAAGGAGCTAATGATACCTCAGGATTATTAAAGAAACCAGAAATTGCCCCTCGTTCCTTTGCCACAAGACCTGTACCTGCAAAGAAGCCAGTAGTTGCTCCAAAGCCAGGGGTAAACAGAGTTTCAGGAGACTGGGATGCATGGACAGAAAGCAAACCAACACCTTCCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081-17-17,17-16,17-15-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.719
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCATTTGCCAGAAAGT
R:
TTTCTTGGCGCCTTTGACCTT
Band lengths:
138-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]