GgaALTA0009099-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32715713-32717733:-
Coord C1 exon
chr4:32717532-32717733
Coord A exon
chr4:32716558-32716606
Coord C2 exon
chr4:32715713-32716557
Length
49 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTTAATTTTCTGTTAGCAGGAC
3' ss Score
6.12
Exon sequences
Seq C1 exon
CTTCCTCCGTCTTATGAGCAGGTGATAAAGGAAATAAATCAAGTGCAAGTGAATACAACAAATAACAATAATGCTGCTGCTCCTAGACATACCACTACTTCTGCAACACAAACTGACTTTCCAGAGGAATTAATCAGCCATTTGCCAGAAAGTAATGTAAAAAGTGGTGTGCCTACACACTGGGAATCTACAAACTATCCAG
Seq A exon
GACCGAGTCCCCTGAAACCTCCTAGGCCTTCTGCATCTCTCTTGAACAG
Seq C2 exon
ATCTTCTTCAGAAAATGAGACTTTCTTAATAGTTCGTGAAAATTCTGAAGGTCAAAGGCGCCAAGAAAATCCCAATGCTGTGATATGTCCTGTACCAAAGCCAAGATCAAGAAGCAATCTCAGACCTTTGGTCAAAAATACTGGAAGTCAGATAAGAGAGAATGGGGAAGAAGTGAACCAGTCTGACACGAAGAGGCAGCAACTTCCAGTTCAGCAGTCATCTGTCTTAGATGATAGCTTACTAGACAATCACGTGACAGTGGACAGCATGAGTACAGGCAAGAGCCAAAGTAGTATTGTTTCAAGAATCAAAGTTTTTGAAACCCAAGGAGCTAATGATACCTCAGGATTATTAAAGAAACCAGAAATTGCCCCTCGTTCCTTTGCCACAAGACCTGTACCTGCAAAGAAGCCAGTAGTTGCTCCAAAGCCAGGGGTAAACAGAGTTTCAGGAGACTGGGATGCATGGACAGAAAGCAAACCAACACCTTCCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081-17-17,17-16,17-15-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.719
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCATTTGCCAGAAAGT
R:
TTTCTTGGCGCCTTTGACCTT
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]