GgaALTA1000119-2/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSV9]
Coordinates
chr13:7707479-7708325:-
Coord C1 exon
chr13:7708112-7708325
Coord A exon
chr13:7707532-7708018
Coord C2 exon
chr13:7707479-7707531
Length
487 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CAAAATGCCTTTTCTTACAGGGT
3' ss Score
8.14
Exon sequences
Seq C1 exon
GAATCATCTGGAGAACTCCTTCAACGCGATTTGTGAGCACCTGGAAAGAAGAAAAACAAAGATCCTGGAAGCCATCAGTGACATTGAGGGGAAACAGCTTTCTCAGATTCAGCCGTGGATAAAAGAACACAAAGAGATGAAGGATGCTGTCAGCAGTGATGTACGGGAGTTGGAGGCTCTGAGGGATCAGAAGGATCCAGTACTCTTCATTAAG
Seq A exon
GGTTTGGCAGCAATACAAGCCAGGTAAGCTCTTCACTGGTGGTCTGCTGTTGCAGTTCACTGAGCTGCTGATGGCTGACCCTCCCTCAGTCCCAGGCTGTCTGCCCACCTGGCACACAGGGCAGGCCCCAGCTTCCCAGGCTCATGCTGGGCTCATGGTAGCTGCCTGTTTTAGCACACTGACAACACGCTCAGCACCTTCCTTCTTCAGAGACATGGAAAAGCCCCAGAATTTTCGTGTGTGAATCTCCACATATAACATGACTTATTTTCTGAACCATCAGCACCCATTCTTGAGACCAGCTTGGGGCAGTCTGTGAATATTTAGGCACCTGTGTGGGCATGCAAAGAACAGATGAGCTCAGATAGTCAGAGTTGTCCCCAGCACTGCATTGCCCCCTGCTTGGCTCAGTTGTTTGCTCAGCGCTGGGATCAGTAACCTCTTCCCATGACTCACTGCTGTTCTGATGCCTTTCTGTATGTTCTAG
Seq C2 exon
GAAGAGGGAACAAGTTCCTAATAAAGATGGTGTAGAACTGGCAGAGCTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001206-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF131661=AAA_13=PD(46.9=83.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTCCTTCAACGCGAT
R:
CAGCTCTGCCAGTTCTACACC
Band lengths:
254-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]