GgaEX1000213 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSV9]
Coordinates
chr13:7704400-7708325:-
Coord C1 exon
chr13:7708112-7708325
Coord A exon
chr13:7707380-7707531
Coord C2 exon
chr13:7704400-7706260
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTCTGTATGTTCTAGGAA
3' ss Score
12.21
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GAATCATCTGGAGAACTCCTTCAACGCGATTTGTGAGCACCTGGAAAGAAGAAAAACAAAGATCCTGGAAGCCATCAGTGACATTGAGGGGAAACAGCTTTCTCAGATTCAGCCGTGGATAAAAGAACACAAAGAGATGAAGGATGCTGTCAGCAGTGATGTACGGGAGTTGGAGGCTCTGAGGGATCAGAAGGATCCAGTACTCTTCATTAAG
Seq A exon
GAAGAGGGAACAAGTTCCTAATAAAGATGGTGTAGAACTGGCAGAGCTGCTCAGTATTATGGATGGATCAATAAAAGATACCATTCAAGAGTTTTTCCAGCCTTACATCCAGTTAATCTTGGACACAAAGCCCTCAGTGGAATCATCACCTA
Seq C2 exon
CTCATGAACATCTGACTTTCAAATCATGTCAAGCACATGGACTACACGTAGATGACAAGGTGCTCAGTGTAGTCGAGCTGCCTTCCTCACTGCCTGTGCCACACAAAGAACAGTTCTGGGTGTACAGCACCAGGCGCTTCTGGAATGGCCAGCACTTCTGGGAGGTGATCACCCGTAACTCATTGTGCTGGAAAGTGGGTGTCATTGATAACAGTTTTCAGTGCTACCTGGAAATGTCTCAGAGGTGTCTCAGGGTGTTCCTAGATAAAAGACAGATTAAAGTCCAATCTCTTAATACAGCCATTGGAATGGTCAGGGTGGAGCTAGATTGCGAAAGAAACACAGTGTCATTTTGTGATGTGTCTGGCAAGGATTATCCGGGCTCTTCTTGGAGCTTTGTGCCCATAGCTACAGTACCCATCCCTGCAAGCTATCCTGTCTATGCTGTCTTCAGCATTTCTCATGGCTCCCTTTCACTCCCATAGCGACATGGGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001206_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF131661=AAA_13=PD(46.9=83.3)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGAGGCTCTGAGGGATC
R:
GACACCCACTTTCCAGCACAA
Band lengths:
250-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]