GgaALTA1001245-1/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:281774-282474:+
Coord C1 exon
chr17:281774-281910
Coord A exon
NA
Coord C2 exon
chr17:282354-282474
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
ATTTCCCACAGGTTTTCCAGAGA
3' ss Score
0.11
Exon sequences
Seq C1 exon
TCTGCTCAAAAGCCAGGAACTGCCAAGAGCTGCTGGATAAAGGGAAGATCCTGAGCGGATGGTACACCATCCACCCCCAAGGCTGCAATGCTACCACTGTCTTCTGCGATATGGACACGGATGGTGGAGGATGGATT
Seq A exon
NA
Seq C2 exon
AGACGCTTGGATGGGTCAGTGAATTTTTTGCGAGATTGGAATTCATACAAACGAGGATTTGGCAACCAGCTGACGGAGTTCTGGCTGGGGAATGACAACCTCCACTTCCTCACCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151-7-10,7-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(19.7=91.3)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATGGTGGAGGATGGATT
R:
TCAGCTGGTTGCCAAATCCTC
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]