GgaINT0126350 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:281774-282474:+
Coord C1 exon
chr17:281774-281910
Coord A exon
chr17:281911-282344
Coord C2 exon
chr17:282345-282474
Length
434 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
GGAATTCTCATTTCCCACAGGTT
3' ss Score
8.38
Exon sequences
Seq C1 exon
TCTGCTCAAAAGCCAGGAACTGCCAAGAGCTGCTGGATAAAGGGAAGATCCTGAGCGGATGGTACACCATCCACCCCCAAGGCTGCAATGCTACCACTGTCTTCTGCGATATGGACACGGATGGTGGAGGATGGATT
Seq A exon
GTGAGTAGGATGAGGAGAGGGAAGCTTTTATTTCCCTACGGTGATTTTTATTGATACTCCAAATGATAGCACTAAGCAACAAAAAGGGAGGAAAGCATTAAAGAGAGGACAAACACACCACAAAGCTGGTGGAGAGGGCAGCTGAAGTTCCTTTGACCAAGCCTGGGTGAATGCAGGGGATTCTTTTGGGAGCTGTCTCTGGGAACAGGCTGAGAACCACAAACCCACCCATTCCTGCTCAGCCAGCAAACTCCCAAGCACAGATGAAGGGAATTTGCAAGAGAGAGATCTCCCCTCTGGTTCAGCACTCCCAGCTGCCCTCTGGAGTGGTGTATGCATTGGGGGTTAGCTGAGGCCGTGCCACCAGCAGGCAGGCAGTGGGGCTTCTTCTGGAGCAGAACGACTGCCGGGGATGGAATTCTCATTTCCCACAG
Seq C2 exon
GTTTTCCAGAGACGCTTGGATGGGTCAGTGAATTTTTTGCGAGATTGGAATTCATACAAACGAGGATTTGGCAACCAGCTGACGGAGTTCTGGCTGGGGAATGACAACCTCCACTTCCTCACCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(19.7=91.3)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCAAGAGCTGCTGGATA
R:
GAGAGGTGAGGAAGTGGAGGT
Band lengths:
246-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]