GgaALTA1001602-2/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr2:77965514-77976192:+
Coord C1 exon
chr2:77965514-77965664
Coord A exon
chr2:77965923-77965936
Coord C2 exon
chr2:77965937-77976192
Length
14 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
ATGGCTTTGTTCTACTTTAGTGC
3' ss Score
7.13
Exon sequences
Seq C1 exon
TGGTCAGTGTATATCCGTGCTGCTGTCCGCAAAGAAAAAGGACTGCCAATCCTGGTAGAACTGCTTCGAATAGACAATGACCGGGTGGTATGTGCAGTTGCTACAGCTTTACGAAACATGGCCTTAGATGTCAGAAATAAGGAGTTAATAG
Seq A exon
TGCTTTGTTCATAG
Seq C2 exon
GCTGGCAGTAGCACTTGCGTCTTCCAGATCAAGGATATGACAAAGCAGCCACCTCTGATCCTCAGATTCTCTATTGAAAGTGATATTGGAGATTATGAAGTGTCAAATCATAGACTTAAAAGATCGTCTCAGGAATTTACTGGACATATTAGTAGGTCCAGCAGCAGAGCTTGGAGATAATTTTCAAATATGTGCAGATAAGGAAGAAAACAGTGTTACATAAATCATTGCTCTTTCTGAATTTTGATGGTATGGTAACCAAACTTTTTAGGCTTTCTATTGTATTTCTTTGTTTTATGGTGGGTTTTTAATTTGTTTTGCTTTTTTTTAGCTATAATTCATAAAAATGCTGTGAATCACTGAAACTTTGTTGTATCTTTCAAAAAATATTTGCTTTCTTGGTTTTGAATTAGTTTAACAGTCATGACAAAAATTATTTCTACTTCCTCTGTACCTTAAGTATGCACTGTTCTTTGTGCTAGCTAGTTAACTTATCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-22-27,22-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=78.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTTTACGAAACATGGCCT
R:
CAGAGGTGGCTGCTTTGTCAT
Band lengths:
106-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]