GgaEX0019673 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:77965514-77995618:+
Coord C1 exon
chr2:77965514-77965664
Coord A exon
chr2:77992032-77992242
Coord C2 exon
chr2:77995534-77995618
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTCGTTTTCTTCCAACAAAGGCA
3' ss Score
4.45
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGGTCAGTGTATATCCGTGCTGCTGTCCGCAAAGAAAAAGGACTGCCAATCCTGGTAGAACTGCTTCGAATAGACAATGACCGGGTGGTATGTGCAGTTGCTACAGCTTTACGAAACATGGCCTTAGATGTCAGAAATAAGGAGTTAATAG
Seq A exon
GCAAATATGCCATGAGGGATCTGGTCCACCGACTGCCAGGCGCTAACAACAGCAACAGCTCAGCAAGCAAGGCCATGTCTGATGACACCGTTACTGCCATTTGCTGCACGCTGCATGAAGTCATCACTAAAAACATGGAGAATGCCAAGGCCTTACGAGACGCAGGCGGCATTGAGAAACTGGTTGGCATATCTAAGAGTAAAGGAGACAA
Seq C2 exon
GCATTCGCCAAAAGTGGTGAAAGCAGCATCTCAGGTCCTCAATAGTATGTGGCAGTACAGAGACCTGAGAAGTCTCTACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'22-30,'22-29,24-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.172
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=78.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAGTGTATATCCGTGCTG
R:
CTTCTTGTAGAGACTTCTCAGGTCT
Band lengths:
236-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]