MmuEX6053101 @ mm10
Exon Skipping
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:30921855-30972877:+
Coord C1 exon
chr15:30921855-30922005
Coord A exon
chr15:30966756-30966966
Coord C2 exon
chr15:30972793-30972877
Length
211 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTCTTTTCTAAAGGCA
3' ss Score
8.91
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGGTCCGTGTATATCCGAGCTGCTGTCCGGAAAGAGAAAGGCCTGCCCATTCTTGTGGAGCTCCTCCGAATAGACAATGACCGTGTAGTGTGTGCAGTGGCCACAGCACTTCGGAACATGGCCCTCGATGTCAGAAACAAGGAACTCATTG
Seq A exon
GCAAGTATGCCATGCGAGACCTGGTCCACCGGCTTCCTGGTGGGAACAACAGCAACAACTCGGGGAGCAAGGCCATGTCAGATGACACCGTGACGGCCGTGTGCTGCACCCTGCATGAAGTGATCACCAAGAACATGGAGAATGCCAAGGCCTTACGGGATGCTGGTGGCATCGAGAAGTTGGTCGGCATCTCTAAAAGCAAAGGAGACAA
Seq C2 exon
GCACTCTCCAAAGGTGGTCAAGGCTGCTTCTCAGGTCCTAAACAGCATGTGGCAGTATCGCGATCTGAGGAGTCTCTACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240-'51-62,'51-57,55-62=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.254 C2=0.276
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=78.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCGTGTATATCCGAGCT
R:
CTTCTTGTAGAGACTCCTCAGATCG
Band lengths:
236-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types