RnoEX6009095 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:84002629-84052503:+
Coord C1 exon
chr2:84002629-84002779
Coord A exon
chr2:84045710-84045920
Coord C2 exon
chr2:84052419-84052503
Length
211 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTTCTTTTCTAAAGGCA
3' ss Score
8.95
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TGGTCCGTGTATATCCGAGCTGCTGTCCGGAAAGAGAAAGGCCTGCCCATTCTTGTGGAGCTCCTCCGAATAGACAATGACCGTGTAGTGTGTGCAGTGGCCACGGCACTCCGGAACATGGCCCTGGATGTCAGAAACAAGGAACTCATTG
Seq A exon
GCAAATATGCAATGAGAGACCTGGTCCACCGGCTTCCTGGTGGGAACAACAGCAACAACACAGGGAGCAAGGCCATGTCAGATGACACCGTGACAGCCGTGTGCTGTACCCTGCATGAAGTGATCACCAAGAACATGGAGAATGCCAAGGCCTTACGGGATGCTGGCGGCATTGAGAAGTTGGTCGGCATCTCCAAAAGCAAAGGAGATAA
Seq C2 exon
GCACTCTCCAAAGGTGGTCAAGGCTGCTTCTCAGGTCCTAAACAGCATGTGGCAGTATCGAGATCTGAGGAGTCTGTACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-'32-39,'32-37,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.239 C2=0.241
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=78.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCGTGTATATCCGAGCT
R:
CTTCTTGTACAGACTCCTCAGATCT
Band lengths:
236-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]