DreEX6027503 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30581196-30584857:-
Coord C1 exon
chr2:30584707-30584857
Coord A exon
chr2:30583630-30583852
Coord C2 exon
chr2:30581196-30581280
Length
223 bp
Sequences
Splice sites
3' ss Seq
TTCTTTACTTTTTATCAAAGGCA
3' ss Score
5.12
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
Exon sequences
Seq C1 exon
TGGTCGGTCTACATCCGAGCTGCCGTTCGGAAAGAGAAAGGACTTCCCATTCTGGTGGAGCTGCTGAGAATAGACAATGACCGGGTGGTGTGTGCCGTGGCCACAGCTCTCCGAAACATGGCCCTTGATGTTAGGAACAAGGAGCTCATAG
Seq A exon
GCAAGTATGCCATGAGGGATCTGGTACATCGTCTACCAGGAGGCAACAATAACAACAGTACTGGCACCGGCGGATCTAGCAAAAGCATGTCCGATGACACTATCACAGCGATCTGCTGCGCTCTGCATGAAGTCATCACCAAGAACATGGAGAACACCAAGGCACTTCGTGATGCCGGCGGCATCGAGAAACTCATTGGCATCGCCCGCAGCAAAGGAGACAA
Seq C2 exon
ACATACACCGAAAGTGGTGAAAGCAGCATCTCAAGTTCTCAATAGCATGTGGCAGTACAGAGATTTGCGGAGTCTCTATAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779-'27-25,'27-24,29-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.267 C2=0.276
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=78.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACATCCGAGCTGCCGTT
R:
TCTTATAGAGACTCCGCAAATCTCTG
Band lengths:
228-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]