GgaEX0019673 @ galGal3
Exon Skipping
Gene
ENSGALG00000013001 | CTNND2
Description
NA
Coordinates
chr2:80022996-80054413:+
Coord C1 exon
chr2:80022996-80023146
Coord A exon
chr2:80050827-80051037
Coord C2 exon
chr2:80054329-80054413
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTCGTTTTCTTCCAACAAAGGCA
3' ss Score
4.45
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGGTCAGTGTATATCCGTGCTGCTGTCCGCAAAGAAAAAGGACTGCCAATCCTGGTAGAACTGCTTCGAATAGACAATGACCGGGTGGTATGTGCAGTTGCTACAGCTTTACGAAACATGGCCTTAGATGTCAGAAATAAGGAGTTAATAG
Seq A exon
GCAAATATGCCATGAGGGATCTGGTCCACCGACTGCCAGGCGCTAACAACAGCAACAGCTCAGCAAGCAAGGCCATGTCTGATGACACCGTTACTGCCATTTGCTGCACGCTGCATGAAGTCATCACTAAAAACATGGAGAATGCCAAGGCCTTACGAGACGCAGGCGGCATTGAGAAACTGGTTGGCATATCTAAGAGTAAAGGAGACAA
Seq C2 exon
GCATTCGCCAAAAGTGGTGAAAGCAGCATCTCAGGTCCTCAATAGTATGTGGCAGTACAGAGACCTGAGAAGTCTCTACAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'17-21,'17-20,18-21
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.141 C2=0.224
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=78.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAGTGTATATCCGTGCTG
R:
CTTCTTGTAGAGACTTCTCAGGTCT
Band lengths:
236-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]