GgaALTA1001665-2/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr4:60994383-60996565:+
Coord C1 exon
chr4:60994383-60994557
Coord A exon
chr4:60996390-60996396
Coord C2 exon
chr4:60996397-60996565
Length
7 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TAAGTGTCTTTTTCCCTCAGTGT
3' ss Score
8.65
Exon sequences
Seq C1 exon
TATGTATGCAGCATTCTTCAAGAAATATTAGGATAATTGGAGGGACGGACTCTTCCCCTGGTGAATGGCCTTGGCAAGTGAGCTTACATGTGAAGCTATCTCGCCAGAGACACCTCTGTGGAGGCTCTATCATCAGTAACCAGTGGATCCTTACAGCTGCCCACTGTTTCATGAG
Seq A exon
TGTTCAG
Seq C2 exon
AACCCCAACATTTGGCGTGTTTATGCTGGTGTTTTAAAACAATCAGAAATAAATGAGAATACACCTTTCTTCAGAGTGGAAGAGATTATTATTCATCCTCAGTATAATTCTGCACAGACTGGATATGACATTGCTTTACTGAAGCTTGATAAGGCTATGAATTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571-10-12,10-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.3=79.7)
A:
NA
C2:
PF0008921=Trypsin=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGAGGCTCTATCATCAGT
R:
ACACCAGCATAAACACGCCAA
Band lengths:
93-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]