RnoALTA0014427-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50197304-50198555:+
Coord C1 exon
chr16:50197304-50197463
Coord A exon
chr16:50198380-50198384
Coord C2 exon
chr16:50198385-50198555
Length
5 bp
Sequences
Splice sites
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
3' ss Seq
TTTCACTGTTTGTTCCTTAGGAC
3' ss Score
11.48
Exon sequences
Seq C1 exon
TATGCACAACCAAAATCAGGCCCAGGGTGTTCGGAGGAGCTGCGTCTGTTCACGGCGAGTGGCCATGGCAGGTGACCCTGCACACCACCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCGGTGGATATTGACAGCGGCTCATTGTTTCTCTGG
Seq A exon
GACAG
Seq C2 exon
AGACACCTAAAACTCTGCGTGTCTACGGTGGTATTGTAAATCAATCAGAAATAAATGAAGATACCACTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCAATATACATCGGCAGAAAGTGGGTTTGACATTGCCCTCTTAAAACTGGAACCGGCCATGAATTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-16-20,16-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=81.5)
A:
NA
C2:
PF0008921=Trypsin=PU(3.1=5.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGCTCATTGTTTCTCTGG
R:
TCTTGAACCCTGAAGAAAGTGGT
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]