GgaALTA1001930-2/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQX8]
Coordinates
chr1:117632254-117634840:-
Coord C1 exon
chr1:117634706-117634840
Coord A exon
chr1:117632335-117632394
Coord C2 exon
chr1:117632254-117632334
Length
60 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTTTAAACTTGCTTTGTTAGGTA
3' ss Score
7.64
Exon sequences
Seq C1 exon
ATGTTGCAGAAATAGCCGATGAGGTTTATATGGAAGTGATAGTAGGGGAGGAAGATGCAGCAGTCGCCCATGAACAGCAAATTGATGACAATGAGATTAAAACTTTCATGCCAATAGCATGGGCAGCAGCTTATG
Seq A exon
GTAATAATAACGATGGCATTGAAAGCCGGAATGGCACTGCAAGTGCTCTTTTGCACATAG
Seq C2 exon
ATGAGTCAGCGGGACTTGGGAGACTGGCAAAGCAAAAACCAAAGAAGAAAAGGAGGCCTGAGTCCAGGCAGTATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016327-10-10,10-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.604
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(13.7=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.7=93.8),PF054436=ROS_MUCR=PU(41.2=72.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGCCCATGAACAGCAAAT
R:
TGGACTCAGGCCTCCTTTTCT
Band lengths:
140-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]