HsaALTA1000500-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:HGNC:12869]
Coordinates
chrX:24208218-24209001:+
Coord C1 exon
chrX:24208218-24208370
Coord A exon
NA
Coord C2 exon
chrX:24208900-24209001
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTTTTAATACACATTGTTAGGTA
3' ss Score
4.93
Exon sequences
Seq C1 exon
ATGTTGCTGAAATCGCTGACGAAGTTTATATGGAAGTGATCGTAGGAGAGGAGGATGCTGCAGCAGCAGCGGCAGCCGCCGCCGTGCACGAGCAGCAAATGGATGACAATGAAATCAAAACCTTCATGCCGATTGCATGGGCAGCAGCTTATG
Seq A exon
NA
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-43-59,43-58-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.2=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCTGAAATCGCTGACG
R:
TGGTTTTTGTTTAGCCAGTCTGC
Band lengths:
254-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains