HsaALTA1000500-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:HGNC:12869]
Coordinates
chrX:24208218-24209001:+
Coord C1 exon
chrX:24208218-24208370
Coord A exon
chrX:24208546-24208899
Coord C2 exon
chrX:24208900-24209001
Length
354 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTTGTCTTTATTTTTAACAGGAA
3' ss Score
10.47
Exon sequences
Seq C1 exon
ATGTTGCTGAAATCGCTGACGAAGTTTATATGGAAGTGATCGTAGGAGAGGAGGATGCTGCAGCAGCAGCGGCAGCCGCCGCCGTGCACGAGCAGCAAATGGATGACAATGAAATCAAAACCTTCATGCCGATTGCATGGGCAGCAGCTTATG
Seq A exon
GAATTTCCTTCATGTGTATATTATGTAGAAGGAAGTACTGCAAGAAGTACACAGGCTTTCAGGCTGAAAGTTTTCATCTTGATTATGTTTGGCCCATGACTTTTTCATTTTGGGAGACAACAAGGGAGTCCATGGCGCAAAAATGCTGACATGTGTTTTTTAGCTTTGGAAGCTAGGCGTTTCCTACGGTCTCGCGATAATAAATGTGCTCATAAAACCCATGACCTAGAATGGGGAATTTCTGTCATTCATGAGTATCATGGCTTACTTTTCGTTGTTGTAGTTAATGAAGAATTCCTAATTCTTTAAAATTTATAATACTGTATAATTTTGTTTTTTAATACACATTGTTAG
Seq C2 exon
GTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTGCCCTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-43-59,43-58-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.2=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCTGAAATCGCTGACG
R:
TGGTTTTTGTTTAGCCAGTCTGC
Band lengths:
254-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains