GgaALTA1002092-3/5 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr14:14474915-14480479:-
Coord C1 exon
chr14:14479548-14480479
Coord A exon
chr14:14475065-14475140
Coord C2 exon
chr14:14474915-14475064
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CCATTAACTTTCTTATGCAGTCT
3' ss Score
7.36
Exon sequences
Seq C1 exon
TTTTGACAATTACAAATAAATGAGAAATTAATAAAAACAATCTCTGCCCTGTAATGAGTACAAGCAGTGATGGAATTATATTCTGTCTTTCAATATTCTCCCAAACTCTTTCTGGTTGGAAGGAGAAAAGCGTATTGTGTGACTACCTCTCATCTTGATGAATCTGTGATCTCCTCAAATGGTTAAAATGGGAGAAAAGAATCCACAAAGTTCTTCAGGCTAAGGTGAAAATTATACATGATTGACAACGGTGTAAATGATCACAAGGAGAAAGGTTACTCTAGAAATTATTACACTGCCTGGTCAGTTTTGTACTATGTTCTGCTCTCATTACTTCGAAAAAAGCGGTAAAGGGGCACCACTCCAAGTACTTCTTAATTAGCACATCTGAGCTTCACATCTCCAGACAGTCTTCCCAAAGTGCATGTCCTGAAAGCTGAATGAACCAGTGAAGAGGATCTACTGCAAGCAGCTCAATCCACACCGCCCAGAGCAAACAG
Seq A exon
TCTACAGCATCTCCATTTATATATTGCCATGAAGATTTGTAAATTACGGACTCTAAAATCGTTGTGGACTCTGAAG
Seq C2 exon
CCTCCTTGTAGGACTTTCCATGGGCATCCCAGGCTGCTTGTCTCTGATGTGCACTCTCAGTACGAGTCTGTCAGACGTGGTGAACAGGAAATACCAAAGTACTTTAACTTTGCAAGTGATGTACTGGACAAATGGTCTGAGATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-2-11,2-10,2-9,2-8,2-7-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCATGTCCTGAAAGCTGA
R:
CCTGTTCACCACGTCTGACAG
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]