GgaINT1002470 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:14474915-14480479:-
Coord C1 exon
chr14:14479548-14480479
Coord A exon
chr14:14475141-14479547
Coord C2 exon
chr14:14474915-14475140
Length
4407 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CCATTAACTTTCTTATGCAGTCT
3' ss Score
7.36
Exon sequences
Seq C1 exon
GTGGAGTTTGTTCAGTCTCTGCCAAAGACAGCTACGGGGAAAATCCAGAGAAAGGTTCTGAGAAACAAAGAGTGGGGAAAAGCATAACATTATCTGAAAATGGAGGAGAGAAAATTTCCATCATCCATATCAGCCAAAGCACAGTGTTTGGACTTGGCATGTTAACATGAACCAGAGCACTAAGAGAATGTATGGAAGAACAAACTGTGGGGAGGCGTAAATGGGGGCACCGCTCATATAACTTGAGGATGTGTGATATGAGAACCACTTCTACCATTAACCCACAACAATTCAGATGAGAAAAGACACAAATAATTAAAAATGTGGTATGAGAAAGAACAGAGTGATCCAAGACTGCATGGAAGTTTAATTTTTTTTACTGCAGTTAATATAAACATCAGATTCTTTTAAAGAAATAAAGGTCCACAGCAATTTTGACAATTACAAATAAATGAGAAATTAATAAAAACAATCTCTGCCCTGTAATGAGTACAAGCAGTGATGGAATTATATTCTGTCTTTCAATATTCTCCCAAACTCTTTCTGGTTGGAAGGAGAAAAGCGTATTGTGTGACTACCTCTCATCTTGATGAATCTGTGATCTCCTCAAATGGTTAAAATGGGAGAAAAGAATCCACAAAGTTCTTCAGGCTAAGGTGAAAATTATACATGATTGACAACGGTGTAAATGATCACAAGGAGAAAGGTTACTCTAGAAATTATTACACTGCCTGGTCAGTTTTGTACTATGTTCTGCTCTCATTACTTCGAAAAAAGCGGTAAAGGGGCACCACTCCAAGTACTTCTTAATTAGCACATCTGAGCTTCACATCTCCAGACAGTCTTCCCAAAGTGCATGTCCTGAAAGCTGAATGAACCAGTGAAGAGGATCTACTGCAAGCAGCTCAATCCACACCGCCCAGAGCAAACAG
Seq A exon
GTTGGTAAAATGTGTTGTTCGAGCTCTCAATGGCACGATCACCAAGAAGAAGCAATTGATACTAATCAGAAAAAATGATTTCTGATTCTAGCAGCAATTCAGAAGACTTTCTCATTACTGTATCCTTTTCTCAATTTTCATGTTTCGTTTTCATTTCTAATTTTGCTGGTGAAAGTGTTAAAAACTGTCAGCTTTTCTCTCAGCAAAACTTACTGTAAATTTTGGTAGACCTCCATTTAAAATCTTGTTCACTTTGTCAGCTTTGAGTACGCTGTCCAAGTTTGAACATTACTCCTGAATGTCTGTAGTCTCCTCTCTACCCACTGTTCTGTATATTTTGCTCTTACAGTGCTCTTAAATCTACAGATTTTAGCTAAATCGTAGAATTAGAGCACACAAAGAAATGAAAAGTGGCTTACTATGATATTAAAAAGAATAATCAAAATGGTTAGGGCTTTGTGTTACAGGGCTGAAAGTAGATCTGTTCATTTTCAGCATTAATGGTAGTGGTCATATCTCAAAGAAAAGTTACATTTAATGAAAAGCTTGCTATTTTTCACTGAAAGTGGTTTTCTTAAGTAAGAAAAACAAATAAATACATATTTCTTAGAATATTATGTTAAAAAATCTTTAATATCCCCTTTTTTTGGTAGAATTTAGGAAATATTTAAAAGACTGTATTTCACAAGTAAAATCTTTTTAGTTTAAATTTTTTCCACCCATCTCTGTTAATAGGATTTTCACTTTAAATGAAATTACCACCTGGATTCTAAGTTTCTCCTCTATAATTCTAATTCTGAAGTGGATAGCATGGTTCTTCTGTTCCTTGTCATGATCCCTCTGGAGTACATATGTTGTTATCCAAACGCATGTACTGGATTTTAATCAGATTTGCTTTCCATTCCCTGCTCAAGCACCCACTCGGGAACCTGATTCTCTCTGTCAAGGGGAAACATCGTCCTACTGCTGTGAACCTAATTTTATTGCTTGTTAGTGGATTTATTTGTTGAGTTGAGCACTGTTTTATCAACTGATGCTTAAAAAGAGGGCACGCAAGGACACAGAATCATGTGATTCTCAAGTTATGGCAAATAATTGTATGCATTTTGATACACTGCCTAAACACAGTCCCGTGTACAGAGAAAAATATGCAGCCGTGCTTTCTGTTTTGATAAGGGGATTTGAGAATAGGTTTCAAGGTTGCAAAAAAAAAAAAAAAAATCATCAATTTATATTTGTGACTCCATTTTCAGTCGAAATAAATACACTACCTGCAAATTTTCAAATGAAATGTATAGATTTGCAATCAGATATTCAACTCAAAAATGTGACCACGTCTCTCTACAAGACTTTCATAAGACCTCTCTCAGCAGAGAATGATATGCCCCGCTGTGTAAACAGCCTTATTCATGTCACCATTTTTTGGCAGTATGCATATCTGTGAACAATTATTGTCAAGAATTATTGTCAAGTCCAGGAAGAGTAGTATTTCATCAAAAATCTCTGATGAACGCCTTGAGAACTCACTAAGAATCGCAGCCCCTGCCATCAAACCAGACATTGATGCGTCAGTTTGACAAAAAAAGAGACAAACATCCCGCTAGCTTTATGCTTTTGTCACTCTGTTTTTTATTAATGTTCTAAAAATATGTATATTAACAGTTAAAAGAAGTTTTGATACTTACATATATTAACTACATTATATATTTTAGGAGTGCTGCTCCAGAAGTAACGTCTCCTATTTCATTATGTTGGGCCATGACATCAGAGGCGGATGTTGGTGGCAGTAGAGGTTGAACCTTCCAACCAGTATTCTGTTACATTTTGTAGCTGTGTGACAGATGACAGCAGAGGGGCACGCTGACAGAATCATCTCTGACACGAAAGTACATATGAAAGAAGGGTGTGGAATTGAATTCTTCCATGTTGAAAACATGGTACCCACTGACATTCAACACTTGCTGAATGTTTATGGAGACCAAACAGTGGATGCTGGAACAGTGAGGCAGTGAGTGCTGTGTTTCAGCAGTGGTGACAGCAACAATGGGTCACCTCCTATGGTGCAGATTGTTAAGAGCACAGCATGCAGCTCTTGTTCATTGCTAGCAAAAATACACTGCTAATGGTGCTGAACATAGGTTGTATAATAGTGTATTATAGCTGAGAATTTGCTCTATCAAGCAGAGTTACTGTGCTCATTGTATCTGTTGTAGTTTCCATGAAAATAAATAGGAGGCATTACTTTTGGCCTACCTATATGCAGCCCAAGACAATTCTTCCTCACTCAGTGCAGCCCTGGCAAGCCCAAAGATTGGACATCCATGCCCTGTTGGATTATTTAAAGTTGCTGAATATTTCTCTAACACAATTTCCACAAATTACTGTCAGTTTTGACAACTTACCCATTCAGGGTGGGGGCCTCATCATGCCAGAAAAATTACATTTTTTTAGCTAATACTAATTTATTCTCTTAAAACAGTCTTTCAAATGTATTCAAATAACATCACATAAGCAAAATACTTTATTTTTGATCACTGAAATGTTCAGTTTGATTCAAGTGGATCTGTTTTAATCCAGTCTGGTGCTCCGTGTTGGACATGATTTAGTGGGCAGTATTCATGGTAGGTGAACAGTTGGACTCGATGGTCTTACAGGTCTTTTCCCACCTTATGATTCTATGTTTTTGGTGGTTCTGGTGGTACAGATAACTCTGTTCATGCCTGAACTCCACTGGTAGCCATGAACTGATAGCACTGGGGCCGGGCAGACCTGCAGCTGAACCTGGACCAATCAGGGGAATGCCTGCAGCCCCATCTCAGCCCTTCCTGCCAGTCGCTGATGCCAAGATCATGTTTCTCTTTGACCACTCTTGCCTCTTTGCTTATTCCTCTGGGTTAAAGGCAATGGGTTAAATGCACCAAGTTAAAAATTTTCATGCGTTTTTCCTTCACTCAGCAAGTTAGAAGTGAACAACTGGTAATTGTTTTGAAGACCTCTGGTATTGCTATTTCCCAGCAATGATAATGAATGATATCACTGGTCACTGAATGTTTTTCCGTGGCAACAGTGCTTAATACTCCATCAGGCATTGTGTAAATGCATGACAGTTTCCTGTACTGCTTATACCCAGTAACACATTTGTGTTTATTTTGAATACCTTCATGAGATTTTTTGCTTCACCAAAGATCACAGTCATAACAAGATGTTGAAGCATTCTGCATCCAGCCCACACAGTTTTTTGAGCTGTTGTATATCACTGAAAAGATTAAGTTATGCAAGTTGTAGGTATCTGAGTTCATTCTCCTGATAGGAAGATCAAATGTGATTGTTACCAGCTCCTGCTAATAAAAAAAAAAGGAAAGAATTCCACTGTTAAATTATTTATTTTGTCATGAGGAATAAAGGTTTGGTTTTTTTTATAAAAATCATGGTCAGTACTTCAGAGAAGTGGTTATGGTTGAAGATATGAGACAATATATGCTGAATACATAACTGACTTAGAAACATGGAACAAAGGGCAAAAGTCAAGAAATTAATCAAAAGCTTTCTTGTTATTTTTTCTAAGCTGGCTGATAGCTTCACTCTTTGTAAGAATAGGAAAGAAAATGACCAGCCATCACTCACCTAGACTTGTAACACGACTAGTAATTTCTATTTAGCAGCTGAAAAAGGAAAATCAATAGAAAGGAATAGATTTCAGAGTCCTCATAAACTGCATTGTCCCCTACCATTTTTGCAGGCTCTTCCAGAGGCAAACCAGGTTTTGTTCCATGTTGGATAGTGTTCACGTATGCTCAACAGGCACCTCTAAACAGCATTACATCACTGTTTGGCAAGATTCTGAAGCAATCTTCCAGGTTACTGAAAGTAATGATAAAAATTAAGAAAAAAGAAAAAGAGAAAAGAATAGCAATAAAAAGGAAGCAATTCATTAGACTGCAAATCATTTATGATTCTGGTGGTGAGAACAGATGGAAGAGGGAGGACATTTACAGTGACCAAATGGAAATTGGAAACATCCTTCAGTTCCACATGAAGGAAAAAGAATCTCAGAAAATCAAATACCAAGTGCTCGGGTGTAAGAACAAGTATCCTTCCATCATGTAGGTAATGTTAGCAGCCTTGAAGAACTAATCCGTAATCTATATGGATCAGCCAAGCTACAGACAATATGATCATGTCAGTAGTTTAAGTCCTTAAAAAGCTGTAGGTACATGAAAGCATGCTGGGGAACTTTGCATTTAAACATCAGTTTTGCTGTGAGTAGCCTAAGTGAATTCAACTAATAATTAATCAATTCATAATAGAATTGTCTGTCTTTGGTTACTTTCAAGATAGTGTTTCTCTTTTTCATTATTTTCATTACAGGAAAACAATAGCAACAATTCCATTAACTTTCTTATGCAG
Seq C2 exon
TCTACAGCATCTCCATTTATATATTGCCATGAAGATTTGTAAATTACGGACTCTAAAATCGTTGTGGACTCTGAAGCCTCCTTGTAGGACTTTCCATGGGCATCCCAGGCTGCTTGTCTCTGATGTGCACTCTCAGTACGAGTCTGTCAGACGTGGTGAACAGGAAATACCAAAGTACTTTAACTTTGCAAGTGATGTACTGGACAAATGGTCTGAGATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]