MmuINT1003733 @ mm10
Intron Retention
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:119561493-119563681:+
Coord C1 exon
chr7:119561493-119561813
Coord A exon
chr7:119561814-119563496
Coord C2 exon
chr7:119563497-119563681
Length
1683 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TATTCTACCTTCCTTCACAGCTC
3' ss Score
9.72
Exon sequences
Seq C1 exon
CTGGTCAGGGCAAAACCTTGCTGTCGATTATGAGAATAAACCTCTCATTGATCCCTTGGGCTAAGGAGCAGTTCAACTGACACTCCTCCACAGGCTCAAAGACTGTGCCTCACATAAACTTCGTTAGGAGGAGTAATATCAGCCTAAAATTGTGCACCATTAATGATTAGCTGAGCCCTCGGAGGCTACTCAGGCTTGATTAGGGAACTGTCAGCTTCAGTGCTCTTCTCTCCACTGATGCTGCAGGAATTCTCAAACGACTTCCCAAGAGGGAAATAGACAAAGCTACTGTCAGAGAGAGTTCCAGAAGAAGACCAGAAG
Seq A exon
GTGAGTGTTTATGCAAGAGGCAAAAAGGTGGGGCTGTGCATCATGATGACACTCACCAGTCATGAGGAGTAACAGATAGCAAGGACAGGGAAAATTCTCCAAAGGAAGATAGTTCAAAACTCCTAGAAGCCACAAAGGGAGTGTCACAAGGTGTTAGTGAGGGGACAGCATTGCATAGGAGAGAGGGAGTCTTCAGCCAACCAAAAGTAGAGGACAGGAGAGCTGGTCAGGAGTGTACACAGAAGAAGCAGAGAGTTAGCTAGTGGTGAAGATATAGATGCTGATTTGAAGAGGAGAGGCTAGAAGATAAGAGTCAGTCACTGAAAGAGAGAGAGACCATCAGCCATGAAAACACTAGCTATTGTTCCCCAGGCCTGGGAAGGAAATTCTTCCCTCTTCTTCTTTGAGAAATCAAGAGAATATTTGGAATTGCCACAGACAAGCATTCTTTTTTTGTTTTTGTTTTTGTAGTTTGTTATATTAAGATTTTTTTATTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAAGTCCCCCTTACCCTCCCCACCCCACTCCCCTACCCACCCACCCCCACTTCTTGGCCCCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCTACTAGGCCATCTTCTGATACATATGCAGCTAGAGACATGAGTTCCGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGTTCTTCCATTGGGGACCCTGTGTTCCATCCATTCTTCTGCCTGAACCAAGGGGTCTGGGAATCCAGCAAACACAATGGATTGCTGGCTCGATTCCCTGACTCAAAGTTCATTAGGCTTAAAATTCCAGTCTCATCTAAGAGCATGTGACAGAATTCAAAGACCAGTGTTTTTAGCTTTGGAACATCTTTCCATGGAGCCAATGAAATGAAAAAAATACAACAGCTATAATCTTCTAAATGATTGCTTATGTTAGACCCTGCACTACACATGGGTAGTTTTTCAGATATGTCAATTAAAAGGGACTCTAAAGAATTATTGTATTAGCCAGTAGTTGCTGCACTAATGAGCATTCCAAGCATTTTATAGTTGTTTCCTTCTAAACACAGATATAGAATGTGCCTACAAAACTTAGTTGAAAATAACTGTAAGTTGAAAGGGGCCATGTTGGGAACTCCTCATGACATCATCTGGGGCCTCAGGAAAGGTTAGTGCTTTTCTGGGATATGCGGTCTCACAGGAAGCCCCAAAAATGATGATAGGGAGATAGTACCTTGGGTAAGAGCACTTACTGAAATAGCATGAGAACCCTCATTCAGAAGCCAGGTACCCATGTAAAAAACTGTGTGTTTGTGTGAGCCCAGTGCTAGGGGAGCAGAGACAAAAGGATCACGGAGACTCTTTGGCCAGCAAGCCTAGCCAGAAATGGGAGCTGGTGGAATGGTTCTTTAGGAGAATAATACACAGAAAGAGACTGTACCAGGCACTCAGTTTCAATTCAACTCACCCACAAATACAACCAATCAACCCTGGAGGACAGAGAAGAGATATATGTCTCTACTAGCTTATGGCAAGTGTCAAAATCCAGTAGGGACGAACTCACCTATTCTACCTTCCTTCACAG
Seq C2 exon
CTCTGACTATGCATCATCTATGGAAAATTCCAAGACTTTTCACTCTCTGGGGGAATGAGATTTCCTGCCGTACTTTCCATATGAATATCAAGAAACTAATACCCATACAGTGGGGCCACCAGGAAGCACCTGCCAAGTTCAACTTCGCTAGTGATGTGATAGATCACTGGGCCAGCGTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945:ENSMUST00000167935:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTAGCTGAGCCCTCGGA
R:
CTTCTCTACGCTGGCCCAGT
Band lengths:
344-2027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types