HsaINT0002985 @ hg19
Intron Retention
Gene
ENSG00000183747 | ACSM2A
Description
acyl-CoA synthetase medium-chain family member 2A [Source:HGNC Symbol;Acc:32017]
Coordinates
chr16:20463703-20471613:+
Coord C1 exon
chr16:20463703-20463788
Coord A exon
chr16:20463789-20471428
Coord C2 exon
chr16:20471429-20471613
Length
7640 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GTCTCTTCTTTCTTTTACAGGCC
3' ss Score
13.13
Exon sequences
Seq C1 exon
ACTCCAGGTTCTTCAGTTTTGGAACTCAAACTGGCTCTCCTTGCACCTCAGCCTGCAGATGGCCTATTGTGGGACCTTGTGATCAT
Seq A exon
GTGAGTTAATACTGAATAAACTGTATATATATATACAGTTGTGTATATATATATACACACATACATATGTTAATACTTAGTAAACTCATATATATGCTTATATATATGAGTTTATAAGTATTACTTATACATATGAGTTTATAAAATATATATATTCCATTAGTTCTGTTTCTCTAGAGAACCCTGACTAATACAGATTTTGGTACCAGAAGTGGTTCTAGAGGAAAAGAATATTAAGGATGGAGTTCTTTTGTTGGTTTTGGGGTTTCTGGAGTTGGTGCCTTAATATGATTAGACCCCAAAATACTAAGGACTCTACTTCTAATAGTATGGAGAAGACTGATAGCCCTTGGTGTGAACTGTTTAAAGAGTTATACAAAATAAATGCATTTGACACTCCTGATTCATTGCTCATGAGAGGCAAGGAGTTTAGTGACCCTATACATCATACCTTTGACCATATGTGGAGAACCAAGGAACATAATGAAGCTGGTTGGTTGCTCCTAAGTTCAGTGGATAAAGTGATGAAAGAAAATGATGAACTCGGGGATTCTATCTCACCGCTTCAGAAGCAGATACTGAGCCTCAAATCTGCCAAGATTGCCCTGAGTGAGAGTCTAATCTCCTGTAGAGAAAGAACTGAAATTGTGGAAAAATAGACATAAGCTCTTATCATGTTAGTGGCTGACCTGCAATGAAAGGTGCATGCACAGCCTCACCATGCACAGCCTCACCAAGTATCTACTGTTAAAGTGAGGGCATTGATTGTTTTGCAGGAAGTCAGGGACCCTGAATGGAGGGATCGGCCAGAGCTGAGGCAGAAGAACATAAATTGTGAAGATTTCATGGATATTTATCACTTCCCAAAATTAATACTTTTATAATTTCTTATGCCTGTCTTTACTGCAATCTCTGAACATAAATTGTGAAGATTTCATGGACATTTATCACGTCCCCAATTAACACTCTTATAGTTTCTTATGCCTATCTTTACTTTAATCTCTTAATCCTGTTATCTTCATAAGCTCAGAATGTAATTCACCTCAGGACTACTATTGCACAAATGGATTGTAAAACATGTGTGTTTGAACAATATGAAATCAGTATACCTGGAAAAAGAACAGAATATCAGTGATTTTCAGGGAACAATGGAAGATAACTATAAGGTCTGACTGCCTGCGGGGTCGGGCAGAATAGAGCCATATTTTTCTTCTTGCAGAAAGCCTATAGAAGGATGTGCAAGTAGGAGAAATATTGCTGAATTCTTTTCCCAGCATGGAAGAACCCTGGGGAAGGAATGCATTCCTGGGGGTAGGTCTATAGATGGCCTCTCTGGGAGTGTTTGTCTTATGCGGTTGAGATAAGGACTGAAATACGCCCTGGTGTCCTGCAGTACCCTCAGGCTTACTAGGATTGGGAAATTCCAGCCGGGTAAATTCTAGTCAGAGTGGTTCTCTGTTCTCAAACCCTGTTTCCTGTGAAGATGTTTATCAAGACAATGTGTGCACAGCAGGACATAGACCCTCATCAGTAATTCTAATTTTGCCTTTGCCTTGTGATCTTTACTGCCCTTTGAAGCATGTGATCCTTGTGACCTACTCCCTGTTCATACACCCTCTCCTCTTTTAAAATCCCTAATAAAAACTTGCTGGTTTTGCTGCTCGGGGTCACCATCATAGTCCTACCACTATGTGATGACAGCCCCAGAGGCCCAGCTGTAAAATTTCTGTCTTTGTACTCGTTCTCTTTATTTCTCAGACCGGCCGACACTTAGGAAAAATAGAAAGAACCTATGTTCAAATATTGTGGGCTGGTTCCCCTGATAGATTGGAAAAGAATGAGACCCTGCAACTTGGAATGGGGAGGTATGGGAGGACACTGGTGAAGCTGGGGTCACTGACTTTGTAAACTCCAATGAACTTTTTTTGCCAGAAGAAACAACTTCCTCCCCACCCAGTAGTGGCAGCATTCCCTCCCTAACCCATGCTGCCATCAGCCTTTCCACCTTTGTCTGAGGAGGTAAACTCTGTGCTGCCTGAGGCAATAGTGATGGCCTCCCCTGAGGCAGTTGCCAAGCAAGATAATGAGAAATAACAATCAGTACAGTTTGGCTCTCAGAAAGCCACATCCCTAGGAAAAGGGAAAGAGTACTACATCAGGGGAACATCCCATGGGAAAAAAGAATCTGAACAATAGCCTTGAGCCCCAGATCTTCCCTCTAACATAGCCTACCCAAATGAGAAGGAACCAGGAAAACGATTCTGGGAATATGACAAAACAAGGCTGTTTAACACCTCCCCCCAAAAATCACACTAGCTCACCAGCAATGGATCCAAACCAAGAAGAAACTCCTAATTTACCTGAGAAAGTATTCAGAAGGGCAATTATTAAGCTAATCAAAGAGGCACCAGAAAAGCTGAAGTCCAATTTAAGGAAAAAAAAAAATACAAGTTATGAGGGGAGAAATCTTCAGTGAAATAGATAGCATACATAAAACAATCATAACTTTAGGAAATAAAGAACACAGAGAAAAACACACTGAAAAGCCTCAACAATAGAATTGAACAAGCAGAAGAAATAACTTCAGAGCTTGAAGACAAGATTTTGACTTAGCCAAATCCAACAAAGACAAAGAAAAAAAAAATTTTCAATGAACAAAGCCTCCAAGAAGTTTGGGATTGTGTTAAATGATCAAATCTAAGAATAATTGGCATCCTTGAGATAGAAGAGACATCTAAAAGTTTGGGAAATGTATTCAAGGAAATAATCAAGGAAAACTTTCCCAGCCTTGCTAAAGACCTAGACATCCAAATATAAGAAGCTCAAAGAACACCTGGGAAATTCATTGCAAAAAGATCATTGCCTAGGCACATTGTCATCAGGTTATCTAAAGCCAAGATGAAGGAAAGAATCTTAAGAGCTGTGAGGCAAAAGCACCAGGTAATCTATAAAGGAAAACCTGTCAGATTAACAGCAGATTTCTCAGCAGAAATCCTACAAGCTAGAAGGGATTGGGGCCCTATCTTCACACTCCTTAAAAACAAATTATCAGCCAAGAATTTTGTATCCAGTGAAACTAAGCTTCATAAATGAAGGAAAGATGCAGTCTTTTTCAGACAGAGAAATACTGAGAGAATTCACTACTAGAAAGCCAGCACTACAAGAACTGCTAAAAGGAGCTTTAAATCTTGAAACAAATCCTGGAAACACATCAAAATAGAACCTTTTTAAAGCATAAACCTCACATGACCTATAAAACAAAAATACAATAAAAAAAAAACCCAAGCTACACAGGCAACAAATAGCACAATGAATGGAATAGTACCTGACATCTCAATACTAATGTTGAATGTAAACGGCCTAAGTACTCCATTTAAAAGATACAGAATTGCATTATTGATAAGAATATGCCAACCAAGTATCTACTGCTTTCAAGAGACTCATCTAACACAAGAACTCACATAAACTTAAGGTAAGGGGGTGGAAAAAGACATTCCATGCAAATGGACACCATAAACAAGCAGGAGTAGCTATATTTATAACAGACAAAACAAACTTTAAAGCCACAGCAGTTAGAAAAGACAAAGAGGGACATTATGTAATGATAAAAGGTCTTGTCCAACAGGAAGACATCACAATTCTAAATATATATGCACCTAATACTGGAGCTCCCAAATTTATGAAACAGTTACTACTAGACCTAAGAAATAATATAAACAGCAACACAATAATAGTGGGGGACTTCAATACTCCACTGACAGAACTAAACAGGTCATCAAGACATAAAGTCAACAAAGAAACAATTGATTTAAACTGTACCGTAAAACAGATGAATTTAACAGATATTTACAGAACATTCTACCCAACAACCATGGAATACACATTTTATTCATCAGTGCATGGAACTTTCTCCAAGATAGACCATATGATAGGCCACAAAACAAGTCTCAATAAATCTGAGAAAAGTGAAATTATATCAAGTACTCTCTCAGACCGCCTTGGAATAAAATTGGAAATCAACTCCAAAAGGAATCTTCAAAATCACGTGAATACGTGGAAATTAAATAACCTGTTCCTGAATGATCATTGGATCAACAATGAAATCAAGATGGAAATTTAAAAATTTCTCACACTGAAGGATAATAGTGACACAAGCTATCAAAACTTCTAGGATACAGCAAAGATGGTACTAAGAGGTAAGTTCATAGCCTTAAATGCCTTCATCAAAAAGTCTGAAAGAGCACAAATAGACAATCTAAGGCCACACCTCAAGGAACTAGACAAACAAGAACAAATCAAACCCAAACCCAGCATAAGAAAGGAAATAACCAAGATCAGAGCAGAACTAAATGAAATTGAGATAAAAAAATACAAAAGATAAATGAAACAAAATCTGGTTCTTTGAAAAGATAAATAAGATTGGTAGACCATTAGGAAGATTAACCAAAAAAAAAAAAAGAACAAAGAAAATCCAAATAAGCTCAATTAGAAAGGAAATGGGAGATATTACAACCGACACCACAGAAATACAAAAGATCATTCAAGGCACTACAAACAGCTTTATGCACATAAGCTAAAAAACTTGGAGGAGATGGATAAATTCTTGGGAAGATACAACCCTCCTAGCTTAAGTCAGGAAGAATTAGAAAGCCTGAACAGACCAATAACAAGCAGCGAGATTAAAATGGTAATACAAAAATTATCAACAACAACAACAACGACAACAAAAAAGCCATGACCAGATGAATTCACAGCTGAATTCTACCAGACATTCAAAGAAGAATTGGTACCAATCCTATCGACGCTATTCCACAAGATAAAGAGGGAATCCTCCCTAAATCATTCTATGAAGCCAGTATTACCCTCATACCCAAACCAGAAAAGGATGTAACAAAGAAAGAAAACTACAGACCAATATCCTTGATGAACATAGATGCAAAAATTCTTAATTAGCTGCCAGCTAACTGAATCCAACAGCATATCAAAAAGATAATCCACCATGATGAAGTGGGTTTCATACCAGGGATGCAGGAATGGTTTAACGTACACAGGTCAATAAATGTGATACACCACATAAACAGAATTAAAAACAAAAATCAAATTATTATCTCAATAGATGTAGAAAAAGCATTTGACAAAAATCCAGCATCCTCTTATGATTAAAACCCTCAGCAAAATCAGCATACCATGGATATACCTTAATGTAATAAAAGCCATCTATGATAAACCCACAGGCAACATAATAGTGAATGGGGAAAAGTTGAAAGCATTCCCTCTGAGAACTAGAACAAGACATGAATGCTTACTCTCACCACTTGTATCCAGTATAGTACTGGAAGTCCTAGCCAGATCAATCAGACAAGAGAAAGAAATAAATGTCCTCCAAATTGGTAAAGAGGAAGTCATACAGTAGCTGTTTGCTGTTAATATGATTGTATACCTAGAAGACCTTAAAGACTCCTCCAAAGAACTCCTACAACTAATAAATGAATTCAGCAAAGTTTCAGGACACAAAATTAATGTACAAAAACCAGTAGCTCTGCCATACTTTAATAGCAACCAAGCTGAGAATTAAATCAAGAACTCAACCCCTTTTATAATAGCTGCAAAAAAAAAATACTTAGGAATATACCTAACCAAAGACCTATTCAAGGAAAACTACAAAACCCTGCTGAAAGAAATCATAGATGACACAAACAAATGGAAACACATCCTATGCTCATGGATGGGTAGAATAAATATTGTAAAAATGACTATATTGCCAAAAGCAATATACAAATTCAGTGCAATTCCCATCAAAATACCACCATCATTCTTCACAGAACTAGAAAAAAAATCCAAAAATATTGTATCTATATATCTATATATACTATATATTATATATCTAATATATCTAGATATATATGTATTATATATTTATGGATAACATATCTCCATATATACTATATATAGTATATGCAGTTATGTAGTATATATAACTATTTATAATATAATATATGGATATAGTATATGTATTATTATATAATACATAATATTACATTATATATTATATAATGTGTTATATACAATATAAATGTATAATACCCATATATTATATATAATATATCCATATAATATAGTATATATATTTTTTATATATATATATATGTATTTTTTGCCACACTCCTGTGCCTTTCTTCATTCCAAGCTCATGGATATATAATATATCTATATATCTCTATATCTGTCTATATATATATCATCTTCCATGAAGTCCGTATGGTATGGGAGGGAGACAGCATGAGCTTGGAAGGAAGAAAGGCACAGGAGTGTGGCAATGTATATTACATATATATAATATATATATTATATAAACATAAATATATATAAAAAAGAATTTTTTATATTTTTTAGGTATATACTATATAATACATACATAGTATATATTATATATATATGCATATATATATATATATATATATATATACATATATATATATAATGAAATACTACTCAGCCATGAAAAAGAATGACTTAGTGGCATTCGCAGCAACCTGGATGGGATTGGAGACCATCGTTCAAAGTGAAGTAATTCAGGAATGGAAACCCAAGCATCATATGTTCTCAGCCATAAGTGGGAGCTAGGGTATACATTGGTGCAAAGGCATGAGAATGATACAATAAACTTTGAGGACTTGGGGGAAATGATGGGAAGGAGGTGAGGAATAAAAGGGTACAAAGTGGGTTAAGTGTATACTGTAAGTGTTAAGTGTATACTCCTCGGGTGATGGGTGCACAACAATGTCACAAATCACCAATAAAGAACTTATATAGAAACAACAATTATGACAGCTGTAATTTCTAAAGTGATTGTGTTAGGTCCTGTGCACTAGATGGATAGGACCTGGGATTTAGGATTTATCAGTCCAGATTCACTTTAAAGAAAAGGATGCTACTTGTATTAGTTAGCATTTGCTACAGTAACAAACACCCTATACATCTTAGTAGCTTTTAGTCATGCATATTTTCCCCTATGGGTCTGTGTGTTGCTAGTGGCCATGCTAGGCTCAGCTCAACTCCACATTTCTTGTTGTTCTGGGTCCCAGTCTGAAGGTACAGCATGATCTGGGTTATGCAAGTCTCATGCAGAGGGGAGAAATGTGAGAATTTCTGATGAACCGTAGAATCCCAGACACTCACATCTCGTTGACCAAAGCATATCTCATGAGCAAGCCAAAGTCAATGAGAGGTGGATACATATTCTTCCTCCTAAATGCACTGGGAAGTCACTTGAAAATGAATGGGGATTTATAATCCTAGAATGGAAAGGGAGTGAATTGCTGGGAACAACTATCCCATCTATGACCCACTGTATTTTAAGCACAAGGGGATTTATTACATGGAAATGGGCGTTCACAAAACTGTCAGAAGTGTTGAAGATGTGGGATCTAGGACTGGGTCTGTATCCTCTTATGCCTTTAGAAAACAGCACCCCACAAGGAGACTGAAACAGATGCTGAGTGCCAATTTACTCATAACTACAGCAAATTAATTCCTGGGAAGAATCCTATAAGGTTGGGATGAATCTCCTGAAGCTGCTGATGATCAGTAGAGCAATCTGTTAAAGAAGCTCTCACCTGTGTCTCTTCTTTCTTTTACAG
Seq C2 exon
GCCTGAATATGCATTGGCTGCGAAAAGTTCAGGGACTTTGCACCCTGTGGGGTACTCAGATGTCCAGCCGCACTCTCTACATTAATAGTAGGCAACTGGTGTCCCTGCAGTGGGGCCACCAGGAAGTGCCGGCCAAGTTTAACTTTGCTAGTGATGTGTTGGATCACTGGGCTGACATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183747-ACSM2A:NM_001010845:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)