MmuINT0010256 @ mm9
Intron Retention
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:126705222-126707195:+
Coord C1 exon
chr7:126705222-126705327
Coord A exon
chr7:126705328-126707010
Coord C2 exon
chr7:126707011-126707195
Length
1683 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TATTCTACCTTCCTTCACAGCTC
3' ss Score
9.72
Exon sequences
Seq C1 exon
TTCAGTGCTCTTCTCTCCACTGATGCTGCAGGAATTCTCAAACGACTTCCCAAGAGGGAAATAGACAAAGCTACTGTCAGAGAGAGTTCCAGAAGAAGACCAGAAG
Seq A exon
GTGAGTGTTTATGCAAGAGGCAAAAAGGTGGGGCTGTGCATCATGATGACACTCACCAGTCATGAGGAGTAACAGATAGCAAGGACAGGGAAAATTCTCCAAAGGAAGATAGTTCAAAACTCCTAGAAGCCACAAAGGGAGTGTCACAAGGTGTTAGTGAGGGGACAGCATTGCATAGGAGAGAGGGAGTCTTCAGCCAACCAAAAGTAGAGGACAGGAGAGCTGGTCAGGAGTGTACACAGAAGAAGCAGAGAGTTAGCTAGTGGTGAAGATATAGATGCTGATTTGAAGAGGAGAGGCTAGAAGATAAGAGTCAGTCACTGAAAGAGAGAGAGACCATCAGCCATGAAAACACTAGCTATTGTTCCCCAGGCCTGGGAAGGAAATTCTTCCCTCTTCTTCTTTGAGAAATCAAGAGAATATTTGGAATTGCCACAGACAAGCATTCTTTTTTTGTTTTTGTTTTTGTAGTTTGTTATATTAAGATTTTTTTATTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAAGTCCCCCTTACCCTCCCCACCCCACTCCCCTACCCACCCACCCCCACTTCTTGGCCCCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCTACTAGGCCATCTTCTGATACATATGCAGCTAGAGACATGAGTTCCGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGTTCTTCCATTGGGGACCCTGTGTTCCATCCATTCTTCTGCCTGAACCAAGGGGTCTGGGAATCCAGCAAACACAATGGATTGCTGGCTCGATTCCCTGACTCAAAGTTCATTAGGCTTAAAATTCCAGTCTCATCTAAGAGCATGTGACAGAATTCAAAGACCAGTGTTTTTAGCTTTGGAACATCTTTCCATGGAGCCAATGAAATGAAAAAAATACAACAGCTATAATCTTCTAAATGATTGCTTATGTTAGACCCTGCACTACACATGGGTAGTTTTTCAGATATGTCAATTAAAAGGGACTCTAAAGAATTATTGTATTAGCCAGTAGTTGCTGCACTAATGAGCATTCCAAGCATTTTATAGTTGTTTCCTTCTAAACACAGATATAGAATGTGCCTACAAAACTTAGTTGAAAATAACTGTAAGTTGAAAGGGGCCATGTTGGGAACTCCTCATGACATCATCTGGGGCCTCAGGAAAGGTTAGTGCTTTTCTGGGATATGCGGTCTCACAGGAAGCCCCAAAAATGATGATAGGGAGATAGTACCTTGGGTAAGAGCACTTACTGAAATAGCATGAGAACCCTCATTCAGAAGCCAGGTACCCATGTAAAAAACTGTGTGTTTGTGTGAGCCCAGTGCTAGGGGAGCAGAGACAAAAGGATCACGGAGACTCTTTGGCCAGCAAGCCTAGCCAGAAATGGGAGCTGGTGGAATGGTTCTTTAGGAGAATAATACACAGAAAGAGACTGTACCAGGCACTCAGTTTCAATTCAACTCACCCACAAATACAACCAATCAACCCTGGAGGACAGAGAAGAGATATATGTCTCTACTAGCTTATGGCAAGTGTCAAAATCCAGTAGGGACGAACTCACCTATTCTACCTTCCTTCACAG
Seq C2 exon
CTCTGACTATGCATCATCTATGGAAAATTCCAAGACTTTTCACTCTCTGGGGGAATGAGATTTCCTGCCGTACTTTCCATATGAATATCAAGAAACTAATACCCATACAGTGGGGCCACCAGGAAGCACCTGCCAAGTTCAACTTCGCTAGTGATGTGATAGATCACTGGGCCAGCGTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-Acsm2:NM_146197:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTTCTCTCCACTGATGC
R:
CTTCTCTACGCTGGCCCAGT
Band lengths:
287-1970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: