GgaALTA1002260-1/3 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJE7]
Coordinates
chr17:935324-936807:-
Coord C1 exon
chr17:936574-936807
Coord A exon
NA
Coord C2 exon
chr17:935324-935510
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
CTGTCTTCCTTCCGCACCAGCCC
3' ss Score
6.96
Exon sequences
Seq C1 exon
TACTCCCCAAAAGCACACATGTGGGTCCATCCAGAGGCAGCCAACAGTTTTGGGGCGCTGGATCTTGGAGGAGCATCAACTCAGATCAGCTTTGCCCCCAAAGGTTCATTTATAAACTGGAACAAAACCTCCAGGTTCATGCTGTATGGATACAACTACAACATCTACACTCACAGCTACATCTGCTATGGGCAGAATGAGATGTGGAAGCGCCTGGCAAAGGAGTTAATTGTG
Seq A exon
NA
Seq C2 exon
CCCCTGCACCAACCAGAGTGACCCACGCCTGCCTCTCGATGACAGAAACGTGACCCTGGAGGGCAGGAGCAATGCCAGCGGGTGTTTAGTCGCTGTCAAGAAGCTCTTCAACTTCTCGGCATGTGGACAGAGCCAGGACTGCTCCTTCGATGGCATCTACCAGCCCCCCGTCAGCGGGCAGTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274-9-8,9-7,9-6-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(17.8=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGATGTGGAAGCGCCTG
R:
TGTCCACATGCCGAGAAGTTG
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]