GgaINT1002725 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJE7]
Coordinates
chr17:935324-936807:-
Coord C1 exon
chr17:936574-936807
Coord A exon
chr17:935597-936573
Coord C2 exon
chr17:935324-935596
Length
977 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
TTGGATTTTGCTATTCTCAGGAG
3' ss Score
4.98
Exon sequences
Seq C1 exon
TACTCCCCAAAAGCACACATGTGGGTCCATCCAGAGGCAGCCAACAGTTTTGGGGCGCTGGATCTTGGAGGAGCATCAACTCAGATCAGCTTTGCCCCCAAAGGTTCATTTATAAACTGGAACAAAACCTCCAGGTTCATGCTGTATGGATACAACTACAACATCTACACTCACAGCTACATCTGCTATGGGCAGAATGAGATGTGGAAGCGCCTGGCAAAGGAGTTAATTGTG
Seq A exon
GTGAGGGGAGAACTGGGGGGGTGAGAGGGGAACCAGACTCTATTCTTGTGATGCCAAGCACCCTCTTGTTCACATAGTAAAAATATGAATAGATAATGCTCATTCAGAGAGGCATCAGTAGAGACTGAGAGCTGGCAAAGGCTCCCTGGATGTGGGTAGGCAGGTGTGGGGTGGAGCATGGCAGGCATCAGAAGGGAAGGCTTGGGAGGGTTTGTCTGGATTTGTGCATCTGTCTCACAGGAGAGTGCAGAAATGTCAGGATCAGACTCTTCTTGGAGATGCAAGGTGACATTTCCACAAGCAGGAGCACGGGAGCTTTTGACCAGCTGCAGGGAAAAGCTTCCTTCCCAATAATGGTGGACAAATATCAGAATAGGGCCCAGAAATGCTGTGTAGTCTCCATCCTTGGAGATGTTCTAAACTTGCTGGGACAAGGCTCTGAGCAACCCGACCCCGTCAGTGATGGTCTCTGATAGCTGCTCCCCAATTGCTTTATGTCTGTATGAGTGTGAGGAAAGAGAACAGATACATTTCTCAGGGCATTTTTGGAAGGTCAGAGGGAAAGAAGGTCTTCATGGAGGAGCAGCCTGAGAGCAGAAGTGTTTGCTCATGCTGCACAGCCAGGAGGTCCCAGGTGCTGTCCCTGGCTGGGGCTGGAACTGGAGACAGGTAAGGGCTGGGGTGGAGAGGGCTCTGTGTGTCCCACAGCACTCTGCTGGGACTGCAGCATACGACTGCTTGAGTGGGAAGGAGTAGCACACAGAGTGGGCCTGGACAAGATGTGGGGAGAACCAGAGCTAAGCTCCGGGCGGGACTGCGAACAGACAAGGTCAGGATTGAAGTGTGAGGGTCATTCCCTGCTGAACAGGTGGGAGATGCCTGCACAGCTATGCCCTGGGAGGAAGCCACCCAGCACACCCACTGAGAGGTCTGGAGGAGGCTGCAGCCTGCAAATCGTTGGATTTTGCTATTCTCAG
Seq C2 exon
GAGTCGCCCTCCAGCACGCTAGTTGAACATCCTTGCTACCCCAAAGACTACAAGGAAACCATCTCGCTGTCTTCCTTCCGCACCAGCCCCTGCACCAACCAGAGTGACCCACGCCTGCCTCTCGATGACAGAAACGTGACCCTGGAGGGCAGGAGCAATGCCAGCGGGTGTTTAGTCGCTGTCAAGAAGCTCTTCAACTTCTCGGCATGTGGACAGAGCCAGGACTGCTCCTTCGATGGCATCTACCAGCCCCCCGTCAGCGGGCAGTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274:ENSGALT00000014517:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(17.8=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAGATCAGCTTTGCCCC
R:
TTGACAGCGACTAAACACCCG
Band lengths:
342-1319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]