RnoINT0055227 @ rn6
Intron Retention
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2291994-2292584:+
Coord C1 exon
chr3:2291994-2292221
Coord A exon
chr3:2292222-2292320
Coord C2 exon
chr3:2292321-2292584
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TGCTGTTCTTCTCTCTGCAGAGC
3' ss Score
11.97
Exon sequences
Seq C1 exon
TATTCGTCTGGACAATGGATCCTGCCTGAAGATGGGACGCTAGTTGGTGCTCTGGACCTTGGCGGGGCCTCCACGCAGATCAGCTTTGTGCCTCAGGGCCCCATCCTGGACCAGAGCACCCAGGTTACCTTCCGCCTGTACGGCGCCAATTACAGTGTCTACACTCACAGCTACCTCTGCTTTGGGCGGGACCAGATCCTAAGAAGGCTCCTGGCTGAACTGGTACAG
Seq A exon
GTCAGGCTGGTATTTAAAAGCCTAGAGAGGTAGGATGGTGTGGGGTAGAGCAGAGGGGTGGACCAGAGCTTAGCGCTAATGCTGTTCTTCTCTCTGCAG
Seq C2 exon
AGCAGCCAGGTAGCCCGGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCACACTGTCACTGGCTTCCTTGTATGATTCACCCTGCGTCCACACTCCAGATTCCCTGAACTACACCCAGAACCTCACAGTTGAAGGGATAGGCAACCCTGGGAACTGTGTGGCAGCCCTCCGGGGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAAGAGGATTGTGCTTTCAATGGAGTCTACCAGCCTCCCGTGCATGGCCAGTTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239:ENSRNOT00000012289:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(17.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTACCTCTGCTTTGGG
R:
GAATCTGGAGTGTGGACGCAG
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]