HsaINT0056563 @ hg19
Intron Retention
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140330465-140331203:-
Coord C1 exon
chr9:140330973-140331203
Coord A exon
chr9:140330729-140330972
Coord C2 exon
chr9:140330465-140330728
Length
244 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GGCCTCCCTGCCCTCTGCAGAGC
3' ss Score
9.31
Exon sequences
Seq C1 exon
TACTCCTTCACTGGAGAATGGATCCAGCCTCCGGAGGAGATGCTGGTGGGTGCCCTGGACATGGGAGGGGCCTCCACCCAGATCACGTTCGTGCCTGGGGGCCCCATCTTGGACAAGAGCACCCAGGCCGATTTTCGCCTCTACGGCTCCGACTACAGCGTCTACACTCACAGCTACCTGTGCTTTGGACGGGACCAGATGCTGAGCAGGCTCCTCGTGGGGCTGGTACAG
Seq A exon
GTCAGCTGGCCCTGGGGAGGGTGCATGGGGCTGTGGGAACAGGGCTATGGGCACAGGGCTGGCGTGGGTCATCCGGCCCCGGGGAGGGGGCACAGGGTATGGGCGCGGGGCTGGCGTGGGTCATCCGGCACCGGGGAGGGCGCACAGGGTATGGGCGCGGGGCTGGCGTGGGTCATCCGGCCCCGGGGAGGGGCACAGGGCCGCAGGTGTGCGGCTGGTGCTCAGGCCTCCCTGCCCTCTGCAG
Seq C2 exon
AGCCGCCCGGCTGCCCTGCTCCGTCACCCGTGCTACCTCAGCGGCTACCAGACCACACTGGCCCTGGGCCCGCTGTATGAGTCACCCTGTGTCCACGCCACGCCCCCGCTGAGCCTCCCCCAGAACCTCACAGTTGAAGGGACAGGCAACCCTGGAGCCTGCGTCTCAGCCATCCGGGAACTTTTCAACTTCTCCAGCTGCCAGGGCCAGGAGGACTGCGCCTTTGACGGGGTCTACCAGCCCCCGCTGCGGGGCCAGTTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-ENTPD8:NM_001033113:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(23.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(26.9=100),PF0115012=GDA1_CD39=PU(2.6=2.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCGATTTTCGCCTCTAC
R:
TGAAAAGTTCCCGGATGGCTG
Band lengths:
295-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)