GgaINT0126704 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV60]
Coordinates
chr17:928998-930460:+
Coord C1 exon
chr17:928998-929231
Coord A exon
chr17:929232-930196
Coord C2 exon
chr17:930197-930460
Length
965 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
AGCTCCTGCTCTCTCAACAGGAC
3' ss Score
11.33
Exon sequences
Seq C1 exon
TACTCCTTCACAGGCAAGTGGACCCACCCACCAGTAGAGAACGTTGTCGGAGCTCTGGACCTTGGTGGGGCTTCAACCCAGATCACATTTCTTCCTGGGACCACAACTGATGACAAGAACACAACAAGAGCCCTCCTCAGACTGTATGGGACCGACTATTCAGTTTACACCCACAGCTACCTCTGCTATGGAGAAAAGGAAGTCCTGAAGAGGCTCTTGGCATCTTTACACAAG
Seq A exon
GTAATTGCCTCCAGCCTTGTGCTTCTCTGCTGCAGACAAAGCCATGGTTTCACTGAGCTGGGCAGGCAGCACACTCTGAGTATCACAACCACGGGGCTGAGTGCTGTTGTGCAAGCACCAGTGAGGGTTGATACAGTAGGGCCTCCTCTGCAGGGACCACCCCAGGCATGTCCCAGCACTAGGGCAGGAACGAGCCAAGATGAAGTTGGACTGCTGGTGCCTGGTGGCAGGCTCTACTGGGACAGCACGTGCCCGGGGTCCCAGTCCTAGGGCCGTCTGGCCCACCAGCTCTCCATCCCTGTCCCAGTGGAGGGTCTGCATCAGCCCAGACTCACTCACAGGAGCTGGAAGGACCTGAGTATTGTGTGCCAGGAAGCTGGGGATAATGTAGGTTTAAGGGGAGGAATCTGAATAGTCTGGTCGTCAGGGGCAGATGCTGGGGAGTAGAGGAAGGTTCATTGCTGCTTAGGGGAGCCCTAATATCTGTAACATCTGGCTGTGGGGTGAGGGCTCAGTGCCTCATGGTTGGAACAAGAATGGGCAAAAGGTGATGTCCATTGCATGTTAGCAGAAAGAAATCAGCATCCACTTCATTTTTGATAAAGTGGTTTCTCAGTTTTGGCTGTGCTCCTGGCTCTGATGACACTATGATAGAAGAGTGGGAACAAAATGTATGCATGCCCAGCACAGAGCACTAACTCCCAATGCCCTGGACACACAGCTGTTGCTGTAGCTGATTGCTTACTGCAGCGTGGCTGTCCCTACAACTCTGTGCCTGCACCCCATAGTATGGTGTTGCACTGGTGCAGATGTAACCCCATGGGCAGTGGAGGCAGGGTGATGGCAGGGTGTCTGCATTCCTGTGCCTGGTTGTTTGAACAGACAGTGTCTGTGGGCTGCTTCTCTCCTTTCCGTCCTCAGCCCCAGTGCCAGGGTGATGCTAACAGCTCCTGCTCTCTCAACAG
Seq C2 exon
GACGGCTTGTATGTCCAGAATATATCACACCCCTGCTACCCCAAGGGATACCAGGAGAACATCACCATAGCAGAGATCTACGACAGTCCCTGTGTCCCCACCCCAAGCATGCTCAGCCCTGCACAGATCCTCACAGTAACAGGGACAGGGAACCCAGCGGCGTGCCGCACTGCCATCCTGAAGCTCTTCAACTTCACCTGTGGGGCCAACAGGACGTGTGGCTTCGACGGGGTCTATCAGCCGCCCGTGCGGGGACAGTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008936:ENSGALT00000014522:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(17.9=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGTTGTCGGAGCTCTG
R:
CTGGGTTCCCTGTCCCTGTTA
Band lengths:
355-1320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]