MmuINT0057746 @ mm9
Intron Retention
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24939018-24939608:+
Coord C1 exon
chr2:24939018-24939254
Coord A exon
chr2:24939255-24939344
Coord C2 exon
chr2:24939345-24939608
Length
90 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
GCCTTTTCCTCTCTCTGCAGAGC
3' ss Score
13.04
Exon sequences
Seq C1 exon
TATTCCTCTGGACAGTGGATCCTGCCTGAAGAGGGGATGCTAGTTGGTGCTCTGGACCTTGGTGGAGCCTCCACGCAGATCAGCTTCGTGCCTCAGGGCCCCATCCTGGACCAGAGCACCCAAGTCACCTTCCGCCTGTACGGTGCCAACTACAGTGTCTACACTCACAGCTACCTCTGCTTTGGGCGGGACCAGATCCTGAACAGGCTCCTGGCTAAGCTGGCACAGGACAGGTTG
Seq A exon
GTATGTGAAAGGGTGGAGAGGTGGGATGGTGTGGGTAGAGTGGAGGGGTGGATCAGAGCTTAGAGCTAATGCCTTTTCCTCTCTCTGCAG
Seq C2 exon
AGCAGCCAGGTGGCCCCGGTCAGACACCCATGCTACCACAGTGGCTACCAGGCCATACTGCCACTGAGTTCCTTGTATGACTCACCCTGCATCCACACTACAGATTCCCTGAACCACACCCAGAACCTCACAGTTGAAGGGACAGGCGACCCTGGGAACTGTGTGGTAGCTCTCCGAAGTCTCTTCAACTTCTCCAGCTGTAAGGGCCAGAAGGATTGTGCTTTCAATGGCATCTACCAGCCTCCTGTGCACGGCCAGTTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-Entpd8:NM_028093:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(18.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTACCTCTGCTTTGGG
R:
TGTAGTGTGGATGCAGGGTGA
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: