DreINT0063290 @ danRer10
Intron Retention
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41054645-41055266:+
Coord C1 exon
chr6:41054645-41054875
Coord A exon
chr6:41054876-41054999
Coord C2 exon
chr6:41055000-41055266
Length
124 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GGTGTCTTTGCTGTGTCTAGAAT
3' ss Score
5.96
Exon sequences
Seq C1 exon
CACACATTTGAGGGCTCCTGGATCCACCCTAAAGCCGGAAAGATCATTGGAGCTCTCGATCTCGGTGGTGCATCAACACAGATCTCCTTTACCCCAAAAGACCCAGTCAGAGACCCAAATTCAGCATTTAATCTCCAACTTTATGGGTATAAATATGAGTTGTACACTTACAGCTACTTGTGTTACGGCAAAGACCAGGCTTTGAAGAAACTCCAAGCCTACCTTCACAAG
Seq A exon
GTTGGTTTTTAAAGAGTTAGATTAATTAATGATTGTCTGTTTACCTGTTTAAAAAGAAAGTGTCTATAAACAAAAGATGAATGTCACAGTTGAATATCTGATATGGTGTCTTTGCTGTGTCTAG
Seq C2 exon
AATGCGGGATCATCATCATCTATCAGTCACCCCTGCTACCACAAAGGATATAATCTCAATCTTACTCTGGCTGAACTTTACAACTCCCCTTGTGTGGTCCCACCAAGCAGTTTCAACCCCAAGGATACAATCCTTTTTAAGGGAACAGGAAATTCATCCCTTTGCCTATCTCTAATAGAAAACATTGTTAATCTCACTGGTTGTGCATTATCCCCTGACTGTGGCTTCAATGGCATCTATCAGCCTCCAGTCAACGGCGAATTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565:ENSDART00000011245:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(17.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAAAAGACCCAGTCAGA
R:
TTGAAACTGCTTGGTGGGACC
Band lengths:
257-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]