GgaALTA1002611-4/5 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GLA1]
Coordinates
chr2:541631-543518:+
Coord C1 exon
chr2:541631-541757
Coord A exon
chr2:542934-543417
Coord C2 exon
chr2:543418-543518
Length
484 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
CCACCAAAATCCACAAGCAGCCT
3' ss Score
-0.1
Exon sequences
Seq C1 exon
GTCCCCATGGCGTTTAACGACACTTCATTTAGCTTCTCGGAGGACGAGTGGAAGAACTTGAACGAGTGGCAGAAAGAGCTTTACAGGCATATCATGAAGGGCAACTACGAGGCCGTGATCTCGATGG
Seq A exon
CCTGTGACTCGGACGAGTAGGAAGGAACGGTTCTGGCTGTGGCAATCCGGGGCTGGAGGGAACCGTGTGGGGAGGGCACCTCCGCTGCTGCCGCTGGCTGACAGCTCTGGTTCTGACCCCAAGCTGAAGCTCCCATTGCAATGGATCCACGGACTTTAGCACAGAGGAGAAGAGAGGAGGCCTGAAGGTAAGCACAGATGCATTTTCTTATTCTGCTCCTCGCGCTGCAGGCTGGGAGGTGCTCCTCACCTGAGCAGAGCGTGCTCCTGCAGTCTGCTCACTGTCCCAGGGCCCACACAAGGTGAGCGGTGCAGGCATGTGAGAGCATCTTCTTAAGTCTCTTTCCATTACCTGTCCTCCCCAGCAGCAAAGGAAGGTCGGTGGGTGAAGGCTTAAGGTTCTCTGCCCTGAAAGGACAAAGGAAACATTCTGATTCTTTTTTTTTTCCCTTTTTTTTTTCTTTTTTTCTTTTTTTAACATACAG
Seq C2 exon
ATACTGCAATTTCAAAACCTGACCTCCTGTCACGGATTGAGCAAGGAGAGGATCCCAATGCTGAGGACCAGGATGACTCTGAGGGAGGAGAAACCCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026922-2-7,2-5,2-4,2-3,2-2-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCATGGCGTTTAACGA
R:
GGGGTTTCTCCTCCCTCAGAG
Band lengths:
224-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]