GgaALTA1002611-1/5 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GLA1]
Coordinates
chr2:541631-543518:+
Coord C1 exon
chr2:541631-541757
Coord A exon
NA
Coord C2 exon
chr2:543418-543518
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
TTTCTTTTTTTAACATACAGATA
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTCCCCATGGCGTTTAACGACACTTCATTTAGCTTCTCGGAGGACGAGTGGAAGAACTTGAACGAGTGGCAGAAAGAGCTTTACAGGCATATCATGAAGGGCAACTACGAGGCCGTGATCTCGATGG
Seq A exon
NA
Seq C2 exon
ATACTGCAATTTCAAAACCTGACCTCCTGTCACGGATTGAGCAAGGAGAGGATCCCAATGCTGAGGACCAGGATGACTCTGAGGGAGGAGAAACCCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026922-2-7,2-5,2-4,2-3,2-2-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCATGGCGTTTAACGA
R:
CGTAGGGGTTTCTCCTCCCTC
Band lengths:
228-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]