RnoALTA0045683-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006703 | Zfp398
Description
zinc finger protein 398 [Source:RGD Symbol;Acc:1562129]
Coordinates
chr4:77535613-77536191:+
Coord C1 exon
chr4:77535613-77535739
Coord A exon
chr4:77536078-77536112
Coord C2 exon
chr4:77536113-77536191
Length
35 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTCCTTTTTTCCTCTTCCAGATT
3' ss Score
12.22
Exon sequences
Seq C1 exon
GTGCCTGTGGCATTTGATGATGTCTCCATCTACTTTTCCACTCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
Seq A exon
ATTATGCCATGAATCAACCTGATGTTTTATCCCAG
Seq C2 exon
ATTCAACCAGAAGGAGAACACAGTACAGATGACCAACCAAGGCCAGAAGCAAGTGAGATGCCTGCAGACCCCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006703-7-6,7-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.821
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGCAACTACGAGTCTCT
R:
CTTCACTGGGGTCTGCAGG
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]