GgaALTA1003082-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005792 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr6:17109958-17111175:+
Coord C1 exon
chr6:17109958-17110074
Coord A exon
NA
Coord C2 exon
chr6:17110913-17111175
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TTGTCTTTCTTACTTAGAAGCGA
3' ss Score
3.35
Exon sequences
Seq C1 exon
GATATGAATGTGAGCCATTTAACAACCCAGCTGACTTCTTCCTTGATATCATAAATGGTGATTCAACTGCTGTGGCAGCAAGCAAGGAAGATCACAAGCCTGCAGACACAGGAAAAG
Seq A exon
NA
Seq C2 exon
CGAGCAATGAAAATGGAAGAGTAGAAGAGAACATGTCCATCAGTGTGGTAGATACACTACACCAGAAGTATCTCAACTCCAGCCTATATGAGAGCACAAAGGAAGCACTGGGGAAAGTGGAGCGTGAACAGGGAAGGAAGAAGAAAGTATCCAAGAAGGGGCACGAGATTACCTATGCAAATGGGTTCTTCACACAGCTCTATTGGGTGTCCAAGCGTTCCCTGAAAAACCTCATTAGGAACCCACAAGCCTCGATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792-10-11,10-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0106119=ABC2_membrane=PU(10.8=25.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAGCAAGGAAGATCAC
R:
ACCACACTGATGGACATGTTCT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]