MmuALTA1020589-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029802 | Abcg2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:MGI Symbol;Acc:MGI:1347061]
Coordinates
chr6:58672010-58674818:+
Coord C1 exon
chr6:58672010-58672114
Coord A exon
chr6:58674568-58674684
Coord C2 exon
chr6:58674685-58674818
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TTATCTACATTTATCCAAAGCAA
3' ss Score
3.99
Exon sequences
Seq C1 exon
GTTACCACTGTGAGCCCTACAACAACCCTGCGGATTTTTTCCTTGATGTCATCAATGGAGATTCTTCTGCTGTGATGTTAAATAGAGAGGAACAAGACAATGAAG
Seq A exon
CAAACAAGACTGAAGAGCCTTCCAAGGGAGAGAAGCCAGTAATAGAAAATTTATCTGAGTTTTATATCAACTCTGCCATCTATGGAGAAACAAAAGCTGAATTAGATCAACTTCCAG
Seq C2 exon
GAGCTCAGGAAAAGAAAGGAACATCGGCCTTCAAAGAGCCAGTCTATGTTACCTCTTTCTGTCACCAGCTCCGATGGATTGCCAGGCGCTCATTTAAAAACTTGCTCGGGAACCCTCAAGCTTCTGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029802-36-36,36-35-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0106119=ABC2_membrane=PU(10.8=27.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGTGAGCCCTACAACA
R:
GAGCAACAGAAGCTTGAGGGT
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types