GgaALTA1003566-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3131818-3132148:-
Coord C1 exon
chr28:3132053-3132148
Coord A exon
NA
Coord C2 exon
chr28:3131818-3131978
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCCCCCTTCCTCCATTCAGGTC
3' ss Score
12.13
Exon sequences
Seq C1 exon
GTACCCTCATTGTCTCTCCTCCACAGGTCCTGGTGGCCGTGGCGGGCGCTGCTCCTGGCCTGGCTCAGCCTGGGCTGTGGCATCGGCACCACACAG
Seq A exon
NA
Seq C2 exon
GTCCCAGCTCCAGGAGAAGCAATGTGGGGCCCTGAGCCCCCCAGCCGCACTCGGCCCCGCCGGCAGTCAGCCCATGGTGCGTGGGGGTCGTGGGGGCCATGGAGTGCCTGCTCCAGCTCCTGCGGGGACGGCGTTGCGCTCCGCACCCGGAGGTGTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCTCTCCTCCACAGGTCC
R:
CCACATTGCTTCTCCTGGAGC
Band lengths:
114-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]