HsaALTA0000228-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:27912]
Coordinates
chr19:1510844-1513188:-
Coord C1 exon
chr19:1512962-1513188
Coord A exon
NA
Coord C2 exon
chr19:1510844-1510916
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TCGGCCCCTCTGTTCCCCAGGCC
3' ss Score
8.53
Exon sequences
Seq C1 exon
CGCTCGCGTCCGCCGGGCAGTCCCCTGCCGCAGATCCGCGCCCGCCGCGCGAGGGCGCCCGGGGCCGCCGCCCCTCCTGACCCGGGCCTGGGCGCGCCTGCGGAGGCCGCGGTGGGAGGGACCGTCCCAGGCTCCCCACCCCGCCCAGCACCTTGGGCCCCGCCGCTTCCGCTCGCCCTGGGGCCGCTCAGGGAGCCGGGACGCGCTGCCTGGGCTCCGCGCAGCCG
Seq A exon
NA
Seq C2 exon
GCCCCACCTCTTCCAGAACCTCCTGCTCTTCCTGTGGGCCCTGCTGAACTGTGGTTTGGGGGTCAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-0-3,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCCCTGCCGCAGATC
R:
CTGACCCCCAAACCACAGTTC
Band lengths:
276-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)