GgaALTA1004290-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003179 | ANGPTL7
Description
angiopoietin-like 7 [Source:HGNC Symbol;Acc:HGNC:24078]
Coordinates
chr21:4169330-4171421:+
Coord C1 exon
chr21:4169330-4169708
Coord A exon
chr21:4171318-4171320
Coord C2 exon
chr21:4171321-4171421
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CTTTATGGTTTTGATTCAAGTAG
3' ss Score
1.36
Exon sequences
Seq C1 exon
ATGCCAGCAAGATCTACTGTTCAGCTGGCATGGCTCTGCATTATCACTGTGTCTGTTGCTGTCTATCCAGCACTGCTGCAGAAGCCTCCTAAAAGGAGGACAATCAATGGGAACGTACAGTCCAAGATGATGGGATGCTGCGATGAGATTAAAGAGCTCAAGTTGCAAGTAGCCAACCTGAGCAGAATGCTGCAGGAGCTGAGCAAGAAGCAGGAAGGTGACTGGGTGAATGTGGTCATGCAGGTGATGGAGCTGGAAGGAAGCACCAAGCAGATGGAGTCCCGCCTCATTGATGCTGAGAGCAAGTACTCCGAAATGAACAACCAGATAGATATCATGCAACTCCAGGCAGCTCAGACGGTCACGCAAACTTCAGCTG
Seq A exon
TAG
Seq C2 exon
ATGCTGTCTATGACTGCTCATCACTTTATCAGAGGAACTATCGCATCTCTGGTGTTTACAAGCTACCTCCTGATGAATTTCTGGGGAGTCCAGATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003179-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.8=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCATGCAACTCCAGGCAGC
R:
ACACCAGAGATGCGATAGTTCC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]