GgaALTA1004290-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003179 | ANGPTL7
Description
angiopoietin-like 7 [Source:HGNC Symbol;Acc:HGNC:24078]
Coordinates
chr21:4169330-4171421:+
Coord C1 exon
chr21:4169330-4169708
Coord A exon
NA
Coord C2 exon
chr21:4171321-4171421
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TATGGTTTTGATTCAAGTAGATG
3' ss Score
2.46
Exon sequences
Seq C1 exon
ATGCCAGCAAGATCTACTGTTCAGCTGGCATGGCTCTGCATTATCACTGTGTCTGTTGCTGTCTATCCAGCACTGCTGCAGAAGCCTCCTAAAAGGAGGACAATCAATGGGAACGTACAGTCCAAGATGATGGGATGCTGCGATGAGATTAAAGAGCTCAAGTTGCAAGTAGCCAACCTGAGCAGAATGCTGCAGGAGCTGAGCAAGAAGCAGGAAGGTGACTGGGTGAATGTGGTCATGCAGGTGATGGAGCTGGAAGGAAGCACCAAGCAGATGGAGTCCCGCCTCATTGATGCTGAGAGCAAGTACTCCGAAATGAACAACCAGATAGATATCATGCAACTCCAGGCAGCTCAGACGGTCACGCAAACTTCAGCTG
Seq A exon
NA
Seq C2 exon
ATGCTGTCTATGACTGCTCATCACTTTATCAGAGGAACTATCGCATCTCTGGTGTTTACAAGCTACCTCCTGATGAATTTCTGGGGAGTCCAGATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003179-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.8=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCATGCAACTCCAGGCAGC
R:
ACACCAGAGATGCGATAGTTCC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]