MmuALTA1019256-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028989 | Angptl7
Description
angiopoietin-like 7 [Source:MGI Symbol;Acc:MGI:3605801]
Coordinates
chr4:148497988-148500460:-
Coord C1 exon
chr4:148499941-148500460
Coord A exon
NA
Coord C2 exon
chr4:148497988-148498088
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTACTCTGCGTCCCTCACAGATG
3' ss Score
10.86
Exon sequences
Seq C1 exon
TCCATTTCAGAATCTCTAGCTTTAAGAAAGGCTAAGCAAGCACACAGAGGAAGGAGATCACGGGGAAGGAAGAAAACTGCCAGTGTGGGTCAGAGAAAGAAGCTTCCTACTTCTCCAGGGACAGACTCTAAGGGGAACAGGCCTGCACACCATGCTGAGGGAGACCTGGCTATGTGTTATCCTTGTAGCCTTTGTCAGCCACCCAGTGTGGCTGCAGAAGCCTCATAAACGCAAGACACAGCTCAAAGCAGCGGGCTGCTGTGAGGAGATGAGGGAGCTCAAAGCCCAGGTGGCCAACCTCAGCAGTCTGCTGGGAGAGCTGAGCAGGAAGCAGGAGAGCGACTGGGTCAGTGTGGTCATGCAGGTGATGGAGCTGGAGAGCAGCAGCAAGCACATGGAGTCTCGGCTCAGCACTGCCGAGAGCAAGTACTCTGAGATGAACAACCAGATTGACATCATGCAGCTGCAGGCTGCGCAGACCGTCACGCAGACCTCGGCAG
Seq A exon
NA
Seq C2 exon
ATGCCATCTATGACTGTTCTTCCCTGTACCAGAAGAACTACCGAATCTCTGGAGTGTACAAGCTTCCTCCTGACGAGTTCCTGGGGAGCCCTGAGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028989-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.8=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATTGACATCATGCAGCTGC
R:
AGGAGGAAGCTTGTACACTCCA
Band lengths:
126-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types