GgaALTA1008235-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006184 | CERS5
Description
ceramide synthase 5 [Source:HGNC Symbol;Acc:HGNC:23749]
Coordinates
chrLGE22C19W28_E50C23:280507-282535:+
Coord C1 exon
chrLGE22C19W28_E50C23:280507-280613
Coord A exon
NA
Coord C2 exon
chrLGE22C19W28_E50C23:282479-282535
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TGTGTTTCTGGATCTCTTAGGAT
3' ss Score
9.13
Exon sequences
Seq C1 exon
GCTGCAAAGCTAGCCAATTATGCCAAGTACCAGCGTCTCTGTGATGCCTTCTTCATGCTCTTTGGTGTTGTGTTCATTGTCACACGCTTGGGCATTTATCCTTTCTG
Seq A exon
NA
Seq C2 exon
GATTTTGAATACAACCCTATTCGAAAGCTGGGAACTGATCGGTCCCTATCCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184-13-18,13-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGCTAGCCAATTATGCC
R:
CAGGAAGGATAGGGACCGATCA
Band lengths:
162-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]