MmuALTA0009935-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000023021 | Cers5
Description
ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99738665-99739512:-
Coord C1 exon
chr15:99739406-99739512
Coord A exon
chr15:99738731-99738821
Coord C2 exon
chr15:99738665-99738730
Length
91 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTGTTGTCTCCTTGTTCTAGGAT
3' ss Score
12.31
Exon sequences
Seq C1 exon
GCTGCCAAGATGGCCAATTATGCCAGACGTGAGCGGCTCTGTACCACCCTTTTTGTGATCTTTGGCGCAGCTTTTATAGTTTCTCGTCTAGCAATCTTCCCATTGTG
Seq A exon
GATTCTGAACACAACCCTCTTTGAAAGCTGGGAGATTATTGGGCCCTACCCTTCCTGGTGGCTCTTCAATGCCCTTCTCCTGATCCTGCAG
Seq C2 exon
GTGCTCCATGCCATCTGGTCCTACCTAATTGTCCAGACTGCTTCCAAAGCCTTGAGCCGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021-25-28,25-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(6.4=13.5),PF0379811=TRAM_LAG1_CLN8=FE(42.4=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=PD(5.9=60.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGATGGCCAATTATGCCAG
R:
TTTCCCCGGCTCAAGGCTTT
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types