Special

MmuEX0026164 @ mm10

Exon Skipping

Gene
ENSMUSG00000023021 | Cers5
Description
ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99738665-99739512:-
Coord C1 exon
chr15:99739406-99739512
Coord A exon
chr15:99739265-99739321
Coord C2 exon
chr15:99738665-99738821
Length
57 bp
Sequences
Splice sites
3' ss Seq
TATTCCCTTCTTGCCTTTAGCAT
3' ss Score
7.58
5' ss Seq
GCAGTGAGC
5' ss Score
3.29
Exon sequences
Seq C1 exon
GCTGCCAAGATGGCCAATTATGCCAGACGTGAGCGGCTCTGTACCACCCTTTTTGTGATCTTTGGCGCAGCTTTTATAGTTTCTCGTCTAGCAATCTTCCCATTGTG
Seq A exon
CATCACTGAGCCTCTGTGGATTCTGCAGGACCTTGGTTGCCATGTGCAGCGTCTGCA
Seq C2 exon
GATTCTGAACACAACCCTCTTTGAAAGCTGGGAGATTATTGGGCCCTACCCTTCCTGGTGGCTCTTCAATGCCCTTCTCCTGATCCTGCAGGTGCTCCATGCCATCTGGTCCTACCTAATTGTCCAGACTGCTTCCAAAGCCTTGAGCCGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0379811=TRAM_LAG1_CLN8=PD(6.4=13.5),PF0379811=TRAM_LAG1_CLN8=FE(42.4=100)

							
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.9=100)

							
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)

						

					

				








    
Main Inclusion Isoform:
ENSMUST00000109035fB2210





     
                   









    
Main Skipping Isoform:
ENSMUSP00000023762





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000104663, ENSMUSP00000135074, ENSMUSP00000135723
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr12:50135523-50135586 
Human
(hg19)
chr12:50529306-50529369 
Rat
(rn6)
chr7:141390080-141390141 
Cow
(bosTau6)
chr5:29931310-29931373 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGGCTCTGTACCACCCTTTTT

				
R: 
GCATTGAAGAGCCACCAGGAA

				
Band lengths: 
146-203

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"