GgaALTA1008312-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000027497 | CFD
Description
complement factor D (adipsin) [Source:HGNC Symbol;Acc:HGNC:2771]
Coordinates
chr28:2751172-2751730:+
Coord C1 exon
chr28:2751172-2751267
Coord A exon
chr28:2751577-2751581
Coord C2 exon
chr28:2751582-2751730
Length
5 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTCTCCCCGCCCTGCATCAGCAC
3' ss Score
3.04
Exon sequences
Seq C1 exon
CGTCCCCGGAGCGGCCGCTCACTGCAGCCATGGGGCCGTGCGCTGCTGCCGGGTCTGTCCTCGTCCTTCTGCTGCTGCTGGGGGCCGTGGTGGATG
Seq A exon
CACAG
Seq C2 exon
CCCCGGGGGCGGATCCTGGGGGGCTCGGAGGCGCAGCCCCACCGACGGCCCTACATGGCCTCCCTGCAGCTGGACGGGCAGCACATCTGTGGGGGATTCCTCATCGCCCCACAGTGGGTGCTGAGCGCCGCGCACTGCACCGAGCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027497-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.2=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCCTCGTCCTTCTGCTG
R:
ATGTAGGGCCGTCGGTGG
Band lengths:
99-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]