MmuALTA0003977-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000061780 | Cfd
Description
complement factor D (adipsin) [Source:MGI Symbol;Acc:MGI:87931]
Coordinates
chr10:79353598-79354321:+
Coord C1 exon
chr10:79353598-79353725
Coord A exon
NA
Coord C2 exon
chr10:79354204-79354321
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
ACACCTACCCTCCTCAGCAGCAC
3' ss Score
3.97
Exon sequences
Seq C1 exon
AGGGGCAGGAGGTAAGAGGCAGGAGTCCATAAAACAGCCCTGAGAGCCTGCTGGGTCAGTGCCTGCTGTCAGAATGCACAGCTCCGTGTACTTCGTGGCTCTGGTGATCCTGGGAGCGGCTGTATGTG
Seq A exon
NA
Seq C2 exon
CACAGCCCCGAGGCCGGATTCTGGGTGGCCAGGAGGCCGCAGCCCATGCTCGGCCCTACATGGCTTCCGTGCAAGTGAACGGCACACACGTGTGCGGTGGCACCCTGCTGGACGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061780-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.1=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTGGGAGCGGCTGTAT
R:
ACTTGCACGGAAGCCATGTAG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: