GgaALTA1009510-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:8994450-9006067:+
Coord C1 exon
chr17:8994450-8994563
Coord A exon
chr17:9005123-9005420
Coord C2 exon
chr17:9005421-9006067
Length
298 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTCTAAATCTCTTTCGCAGGTG
3' ss Score
10.44
Exon sequences
Seq C1 exon
GGGAGACCTGCTTTACTAACATCAATGAGTGCGAGTCTCAGCCATGTCAGAATGGAGGTCACTGCGTGGACCTTGTTGATGGCTTTCTTTGTCATTGTTTACCAGGTTATTCAG
Seq A exon
GTGTGGAATGTGCTGTTAACATCAATGAGTGTGAGGAGGGTCCCTGCAAGAATGGAGCTGTCTGTGAGGATGGCATTGCTGACTATACCTGCCACTGTGCCCCTAGCCAGGATGGCATTGTATGGGGAGGGAAGAACTGCTCTGTCAAGCTCACTGGGTGCCAGACACATGACTGCCAAAATGAGGCCTTGTGTATCCCGACTTACCAAGCTGAGAGCCACGGCCACCTGTGCCAGTGCCAGCCTGGTTTCTATGATGCCACATGCTCAACACCAACAACATTTTCCTTTGCTTCCAG
Seq C2 exon
AGGGTATCTCCTCATTGAGCTGCCCGTGAACAATCAGAGCAGGAGGGAGGTAGCAGGAGAGCAGCTTGCCAGTGTGTCCCTCCGGTTCCGAACCACCTTGCCCAGCGCCATCCTTTTTTACCGAGGCCATGAAGCTGAATACTTATTCCTGGAGCTCTTGGATGGCATTCTGCGTACAGAACTGAAGAGGCAGGATGAGTACCTCCTGCTGCTGGAGGAGCTGAGAGTTGATGATGGCCATTGGCATAAAGTTGAAGTTGTTCTGCAGAACACTGTGCAGCTCAAACTCTGGCACGACTCCTGTGATGCAGGTGTCTGCATGCAGAGCTCTCCTATCCCACACAATGCTACTCCGATCCCACATGCCTTCCTGAGTGTGTATATTGGAGGTGCTCAGGATCCACTGGCCAACAACACACAAAGCCAGCAGGGCTTTGTTGGCTGCCTGGAAGACTTGCAGGTGGATGCTGAAGCTGTGCTCCCGGTGGCTCTCCCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-6-11,6-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(3.9=5.1),PF0000822=EGF=PU(93.3=71.8)
A:
NA
C2:
PF0000822=EGF=PD(3.3=0.3),PF0000822=EGF=WD(100=11.4),PF0000822=EGF=WD(100=11.1),PF0221019=Laminin_G_2=WD(100=40.8),PF0000822=EGF=WD(100=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCGTGGACCTTGTTGATG
R:
TGGCCATCATCAACTCTCAGC
Band lengths:
294-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]