GgaEX1017524 @ galGal4
Exon Skipping
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:8996678-9006067:+
Coord C1 exon
chr17:8996678-8996872
Coord A exon
chr17:9000436-9000496
Coord C2 exon
chr17:9005123-9006067
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTGTCACAAATGTCCACAAGGAG
3' ss Score
1.47
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCTCTAGGGCTGCAGGGAGGTGAACCGCTCTTCCTCTGAAACATAGTAGTCGGAAAAGCAGTGCCTCTTTCCAAGGAGAACTACATAATAGGTCCTGAGAGTCAGTCCAGTGCATTAGTTTGTGCTTTAACAGAGGATGTGCTCTGAGAGGATATAAGAAGTGTGAATTAAAAGATTGCATGGATACTAAATGAG
Seq A exon
GAGTCGGCTATGAAATCTGTGCTGATTGGCGTGATCCTGAAGGGAATTTTTCTGCTAGCAG
Seq C2 exon
GTGTGGAATGTGCTGTTAACATCAATGAGTGTGAGGAGGGTCCCTGCAAGAATGGAGCTGTCTGTGAGGATGGCATTGCTGACTATACCTGCCACTGTGCCCCTAGCCAGGATGGCATTGTATGGGGAGGGAAGAACTGCTCTGTCAAGCTCACTGGGTGCCAGACACATGACTGCCAAAATGAGGCCTTGTGTATCCCGACTTACCAAGCTGAGAGCCACGGCCACCTGTGCCAGTGCCAGCCTGGTTTCTATGATGCCACATGCTCAACACCAACAACATTTTCCTTTGCTTCCAGAGGGTATCTCCTCATTGAGCTGCCCGTGAACAATCAGAGCAGGAGGGAGGTAGCAGGAGAGCAGCTTGCCAGTGTGTCCCTCCGGTTCCGAACCACCTTGCCCAGCGCCATCCTTTTTTACCGAGGCCATGAAGCTGAATACTTATTCCTGGAGCTCTTGGATGGCATTCTGCGTACAGAACTGAAGAGGCAGGATGAGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-'7-10,'7-9,8-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0000822=EGF=PD(3.3=4.8)
C2:
PF0000822=EGF=PD(3.3=0.3),PF0000822=EGF=WD(100=11.4),PF0000822=EGF=WD(100=11.1),PF0221019=Laminin_G_2=WD(100=40.8),PF0000822=EGF=WD(100=9.8)
Main Inclusion Isoform:
ENSGALT00000038754fB6463
Main Skipping Isoform:
ENSGALT00000038754fB6464
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGAGTCAGTCCAGTGC
R:
GGGACCCTCCTCACACTCATT
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]