GgaALTA1010965-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4907659-4908313:-
Coord C1 exon
chr15:4908088-4908313
Coord A exon
chr15:4907761-4907766
Coord C2 exon
chr15:4907659-4907760
Length
6 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
TTGTGTGTGTGTGTTTCCAGAGA
3' ss Score
9.13
Exon sequences
Seq C1 exon
ATGAGCCTGGGCGACGTGCGGGTGCTGTGGTTGAGGGATCGAGTGCTCGCTGCCCTGGGGTTGACCGACCCGGCGCCTTTCGAGGAGCTGCTCAACCGCAACGGCGGCGAGGCTGGGCGGGCCGTGCTGCGCTTCTTCAACCGCGGTGCTGAGAACGATGACGATGTCACGGCCGTGCTGCTGCTGCGGGCCGAGCGGCGCCCCCAAGAGGGCGGGGAGGCAGCGG
Seq A exon
AGACAG
Seq C2 exon
GTGGTACAGATGAGGTGGGAGATGAACAGGAGGAAGAAGGCTTTGATAACTCATGTCCTGAGCAGCTGGATGACGCCACCTCATCTGTGGCATTGGAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGATGACGATGTCACGG
R:
CCTCCTGTTCATCTCCCACCT
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]